Strain identifier

BacDive ID: 254

Type strain: Yes

Species: Aeromonas jandaei

Strain Designation: 0787-80

Strain history: CIP <- 2004, CECT <- 1994, R. Ruimy, CNRS, Villefranche/Mer, France <- ATCC <- A.M. Carnahan and S.W. Joseph, CDC: strain 0787-80

NCBI tax ID(s): 650 (species)

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General

@ref: 3113

BacDive-ID: 254

DSM-Number: 7311

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Aeromonas jandaei 0787-80 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that was isolated from human stool of patient with diarrhea.

NCBI tax id

  • NCBI tax id: 650
  • Matching level: species

strain history

@refhistory
3113<- ATCC <- A.M. Carnaham and S.W. Joseph; CDC 0787-80
67770ATCC 49568 <-- CDC 0787-80.
120308CIP <- 2004, CECT <- 1994, R. Ruimy, CNRS, Villefranche/Mer, France <- ATCC <- A.M. Carnahan and S.W. Joseph, CDC: strain 0787-80

doi: 10.13145/bacdive254.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas jandaei
  • full scientific name: Aeromonas jandaei Carnahan et al. 1992

@ref: 3113

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas jandaei

full scientific name: Aeromonas jandaei Carnahan et al. 1992 emend. Esteve et al. 2003

strain designation: 0787-80

type strain: yes

Morphology

cell morphology

  • @ref: 120308
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3113TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40557MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
3113COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120308CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
120308CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3113positivegrowth28mesophilic
40557positivegrowth30mesophilic
3113positivegrowth30mesophilic
67770positivegrowth37mesophilic
120308positivegrowth30-41

Physiology and metabolism

oxygen tolerance

  • @ref: 120308
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
120308NaClpositivegrowth0-6 %
120308NaClnogrowth8 %
120308NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose+fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368ornithine-degradation18257
68368lysine+degradation25094
68368arginine+hydrolysis29016
120308citrate-carbon source16947
120308nitrate+reduction17632
120308nitrite+reduction16301
120308sodium thiosulfate-builds gas from132112
120308nitrate+respiration17632

antibiotic resistance

  • @ref: 120308
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
120308oxidase+
120308beta-galactosidase+3.2.1.23
120308alcohol dehydrogenase+1.1.1.1
120308DNase+
120308catalase+1.11.1.6
120308gamma-glutamyltransferase-2.3.2.2
120308lecithinase+
120308lysine decarboxylase+4.1.1.18
120308ornithine decarboxylase-4.1.1.17

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3113+++-+---+-+++----+--+
3113+++----++-+++----+--+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120308+---+----++++----+---+-----+-+-+---++---------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120308+++++-+--++--+---+-+-----------+-+---------------++--+-----++---------------+--++-+---+--++++++--+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
3113human stool of patient with diarrheaOregonUSAUSANorth America44.9429-123.035
67770Stool
120308Human, Stool of patient with diarrheaOregonUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_537.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X74678
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 68
  • aquatic counts: 1144
  • animal counts: 488
  • plant counts: 50

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
3113yesyes2Risk group (German classification)
1203081Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas jandaei 16S rRNA gene, strain ATCC 49568X604131503ena650
20218A.jandaei (ATCC 49568) gene for 16S ribosomal RNAX746781460ena650
20218Aeromonas sp. 'CDC 787-80' 16S ribosomal RNA gene, partial sequenceU886621472ena650

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas jandaei CECT 4228650.3wgspatric650
66792Aeromonas jandaei strain FDAARGOS_986650.36completepatric650
66792Aeromonas jandaei CECT 42282645728043draftimg650
67770Aeromonas jandaei CECT 4228GCA_000819955scaffoldncbi650
66792Aeromonas jandaei strain FDAARGOS_1523650.56completepatric650
66792Aeromonas jandaei strain FDAARGOS_1523650.54completepatric650
66792Aeromonas jandaei strain FDAARGOS_1523650.55completepatric650

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.884no
anaerobicno94.186no
halophileno88.248no
spore-formingno94.987no
glucose-utilyes90.335no
thermophileno99.317yes
flagellatedyes91.586no
aerobicyes77.403no
motileyes90.303no
glucose-fermentyes91.022yes

External links

@ref: 3113

culture collection no.: DSM 7311, ATCC 49568, CDC 0787-80, JCM 8316, BCRC 15862, CCM 4355, CCUG 29543, CCUG 30349, CCUG 30353, CECT 4228, CIP 104171, CNCTC 5357, LMG 12221, LMG 13704

straininfo link

  • @ref: 69936
  • straininfo: 9521

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny2037673Aeromonas jandaei (formerly genospecies DNA group 9 A. sobria), a new sucrose-negative species isolated from clinical specimens.Carnahan A, Fanning GR, Joseph SWJ Clin Microbiol10.1128/jcm.29.3.560-564.19911991Aeromonas/*classification/genetics/metabolism, Aged, Bacterial Infections/microbiology, Child, DNA, Bacterial/genetics, Drug Resistance, Microbial, Humans, Male, Nucleic Acid Hybridization, Phenotype, Sepsis/microbiology, Species Specificity, Sucrose/metabolismMetabolism
Phylogeny13130026Taxonomic study of sucrose-positive Aeromonas jandaei-like isolates from faeces, water and eels: emendation of A. jandaei Carnahan et al. 1992.Esteve C, Valera L, Gutierrez C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.02504-02003Aeromonas/*classification/genetics/*isolation & purification/metabolism, Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Eels/*microbiology, Feces/microbiology, Fresh Water/*microbiology, Phenotype, Sucrose/metabolism, VirulenceMetabolism
Phylogeny27396922Electrochemical Characterization of a Novel Exoelectrogenic Bacterium Strain SCS5, Isolated from a Mediator-Less Microbial Fuel Cell and Phylogenetically Related to Aeromonas jandaei.Sharma SC, Feng C, Li J, Hu A, Wang H, Qin D, Yu CPMicrobes Environ10.1264/jsme2.ME151852016Aerobiosis, Aeromonas/*classification/genetics/*isolation & purification/physiology, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Bioelectric Energy Sources/*microbiology, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Electrochemical Techniques, Electron Transport, Fatty Acids/analysis, Ferric Compounds/metabolism, Hydrogen-Ion Concentration, Locomotion, Microscopy, Electron, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sigma Factor/genetics, Sodium Chloride/metabolism, TemperatureMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3113Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40557Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16050
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69936Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9521.1StrainInfo: A central database for resolving microbial strain identifiers
120308Curators of the CIPCollection of Institut Pasteur (CIP 104171)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104171