Strain identifier

BacDive ID: 253

Type strain: Yes

Species: Aeromonas caviae

Strain Designation: B-968

Strain history: CIP <- 2014, DSMZ <- ATCC <- R. Schubert, Aeromonas punctata subsp. caviae <- P. Liu <- NRRL <- M. Scherago

NCBI tax ID(s): 648 (species)

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General

@ref: 2998

BacDive-ID: 253

DSM-Number: 7323

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, human pathogen

description: Aeromonas caviae B-968 is a facultative anaerobe, mesophilic, motile human pathogen that was isolated from Epizootic of young guinea pigs.

NCBI tax id

  • NCBI tax id: 648
  • Matching level: species

strain history

@refhistory
2998<- ATCC <- R. Schubert (Aeromonas punctata subsp. caviae) <- P. Liu <- NRRL <- M. Scherago
67770Y. Kosako 71 <-- R. Sakazaki 71 <-- ATCC 15468 <-- R. Schubert <-- P. Liu <-- NRRL B-968 <-- M. Scherago ("Pseudomonas caviae").
117222CIP <- 1976, M.Y. Popoff, Inst. Pasteur, Paris, France: strain 545, Aeromonas hydrophila <- ATCC <- R. Schubert, Aeromonas punctata subsp. caviae <- 1936, NRRL: strain B-968 <- M. Sherago, Pseudomonas caviae
117223CIP <- 2014, DSMZ <- ATCC <- R. Schubert, Aeromonas punctata subsp. caviae <- P. Liu <- NRRL <- M. Scherago

doi: 10.13145/bacdive253.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas caviae
  • full scientific name: Aeromonas caviae (Scherago 1936) Popoff 1984

  • synonyms

    @refsynonym
    20215Aeromonas punctata
    20215Aeromonas punctata subsp. caviae
    20215Bacillus punctatus
    20215Aeromonas hydrophila subsp. anaerogenes
    20215Pseudomonas caviae

@ref: 2998

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas caviae

full scientific name: Aeromonas caviae (ex Eddy 1962) Popoff 1984

strain designation: B-968

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.098
6948099.997negative
117223yesnegativerod-shaped
117222yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2998NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36285MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41809MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117222CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
117222CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
117223CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2998positivegrowth28mesophilic
36285positivegrowth30mesophilic
41809positivegrowth30mesophilic
67770positivegrowth30mesophilic
117222positivegrowth30-37mesophilic
117222nogrowth5psychrophilic
117222nogrowth10psychrophilic
117222nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117222
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.987

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
11722229864mannitol+fermentation
11722216947citrate-carbon source
11722217234glucose+fermentation
11722217716lactose-fermentation
11722217632nitrate+reduction
11722216301nitrite+reduction
11722215792malonate-assimilation
117222132112sodium thiosulfate-builds gas from
11722217234glucose+degradation

antibiotic resistance

  • @ref: 117222
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836835581indoleyes
6836816136hydrogen sulfideno
11722235581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836835581indole+
11722215688acetoin-
11722217234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
117222oxidase+
117222beta-galactosidase+3.2.1.23
117222alcohol dehydrogenase-1.1.1.1
117222gelatinase+/-
117222amylase-
117222DNase+
117222caseinase-3.4.21.50
117222catalase+1.11.1.6
117222tween esterase-
117222lecithinase-
117222lipase-
117222lysine decarboxylase-4.1.1.18
117222ornithine decarboxylase-4.1.1.17
117222phenylalanine ammonia-lyase-4.3.1.24
117222tryptophan deaminase-
117222urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117222-+++-++-+-++-++-++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
2998++-----+/-+-+++---+-+++
2998++------+++++---+-+++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117222++++---+-+++-+-+-++++------------+---------------+---------++-----------+--++-+++-+---+--++++-+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2998Epizootic of young guinea pigsUSAUSANorth America
67770Epizootic of young guinea pigs
117222Epizootic among young guinea pigs
117223Epizootic of young guinea pigsUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_19.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_19&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X60408
  • Sequence Identity:
  • Total samples: 1087
  • soil counts: 45
  • aquatic counts: 400
  • animal counts: 595
  • plant counts: 47

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
2998yesyes2Risk group (German classification)
1172221Risk group (French classification)
1172231Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas caviae strain ATCC15468 16S-23S ribosomal RNA intergenic spacer region type 1AF198363476ena648
20218Aeromonas caviae strain ATCC15468 16S-23S ribosomal RNA intergenic spacer region type 2AF198364521ena648
20218Aeromonas caviae strain ATCC15468 16S-23S ribosomal RNA intergenic spacer region type 3AF198365592ena648
20218Aeromonas punctata strain ATCC 15468 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373978471ena648
20218Aeromonas punctata strain ATCC 15468 clone 3 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373979471ena648
20218Aeromonas punctata strain ATCC 15468 clone 2 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373996471ena648
20218Aeromonas punctata strain ATCC 15468 clone 4 16S-23S ribosomal RNA intergenic spacer, complete sequenceEF373997587ena648
20218Aeromonas caviae strain CECT 838 16S ribosomal RNA gene, partial sequenceJX014442151ena648
20218Aeromonas caviae gene for 16S rRNA, partial sequence, strain: JCM 1060AB6261321467ena648
20218Aeromonas caviae 16S rRNAD11169214ena648
20218Aeromonas caviae 16S rRNAD11218215ena648
20218Aeromonas caviae 16S rRNAD11267200ena648
20218Aeromonas caviae 16S rRNA gene, strain NCIMB 13016X604081503ena648
2998A.caviae (ATCC 15468T) gene for 16S ribosomal RNAX746741460ena648

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas caviae NCTC12244GCA_900476005completencbi648
66792Aeromonas caviae CECT 838GCA_018360005contigncbi648
66792Aeromonas caviae CECT 838648.21wgspatric648
66792Aeromonas caviae strain CECT 838648.319wgspatric648
66792Aeromonas caviae strain NCTC12244648.115completepatric648
66792Aeromonas caviae NCTC 122442852469294completeimg648
66792Aeromonas caviae CECT 8382654587763draftimg648
67770Aeromonas caviae CECT 838GCA_000819785scaffoldncbi648

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes91.614no
gram-positiveno98.935no
anaerobicno97.142no
aerobicyes90.427no
halophileno90.135no
spore-formingno96.539no
thermophileno99.727yes
glucose-utilyes89.435no
motileyes90.476no
glucose-fermentyes89.365yes

External links

@ref: 2998

culture collection no.: DSM 7323, ATCC 15468, NRRL B-968, WDCM 00062, NCTC 12244, JCM 1060, BCRC 16001, CCM 4491, CCUG 25939, CECT 838, CGMCC 1.1960, CIP 76.16, GTC 00465, LMG 12160, LMG 3775, NCAIM B.01931, NCIMB 13016, CIP 110812, ATCC 15466

straininfo link

  • @ref: 69935
  • straininfo: 365

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity2351730Microbiologic and clinical evidence supporting the role of Aeromonas caviae as a pediatric enteric pathogen.Namdari H, Bottone EJJ Clin Microbiol10.1128/jcm.28.5.837-840.19901990Aeromonas/isolation & purification/*pathogenicity/physiology, Bacterial Adhesion, Bacterial Infections/*etiology/microbiology, Child, Child, Preschool, Cytotoxins/biosynthesis, Feces/microbiology, Gastrointestinal Diseases/*etiology/microbiology, Humans, Infant, Infant, NewbornEnzymology
Pathogenicity2394803Cytotoxin and enterotoxin production as factors delineating enteropathogenicity of Aeromonas caviae.Namdari H, Bottone EJJ Clin Microbiol10.1128/jcm.28.8.1796-1798.19901990Aeromonas/*metabolism/pathogenicity, Animals, Cell Survival, Cells, Cultured, Cytotoxins/*biosynthesis, Enterobacteriaceae Infections/etiology, Enterotoxins/*biosynthesis, Humans, Mice, VirulenceBiotechnology
Genetics18068695Structural characterization of the O-chain polysaccharide of Aeromonas caviae ATCC 15468 lipopolysaccharide.Wang Z, Liu X, Li J, Altman ECarbohydr Res10.1016/j.carres.2007.11.0162007Aeromonas/*chemistry, Carbohydrate Conformation, Carbohydrate Sequence, Galactose, Glucose, Glycerophosphates, Lipopolysaccharides/chemistry, Magnetic Resonance Spectroscopy, Molecular Sequence Data, O Antigens/*chemistry, Oligosaccharides, Rhamnose
24031204Lectin-binding properties of Aeromonas caviae strains.Rocha-de-Souza CM, Hirata R Jr, Mattos-Guaraldi AL, Freitas-Almeida AC, Andrade AFBraz J Microbiol10.1590/S1517-838220080002000032008
Phylogeny31922468Correction of the type strain of Aeromonas punctata (Zimmermann 1890) Snieszko 1957 and of A. punctata subsp. punctata from ATCC 15468(T) to NCMB 74(T) (=NCIMB 74(T)= ATCC 23309(T)).Holmes B, Farmer Iii JJInt J Syst Evol Microbiol10.1099/ijsem.0.0039602020Aeromonas/*classification, *Phylogeny
Phylogeny31935185Conservation of the name Aeromonas eucrenophila over the name Aeromonas punctata for the organism based on type stain NCMB 74(T) and universally defined as 'Aeromonas DNA hybridization group 6'.Farmer JJ, Holmes BInt J Syst Evol Microbiol10.1099/ijsem.0.0039612020Aeromonas/*classification, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2998Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7323)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7323
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36285Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30625
41809Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10785
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69935Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID365.1StrainInfo: A central database for resolving microbial strain identifiers
117222Curators of the CIPCollection of Institut Pasteur (CIP 76.16)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2076.16
117223Curators of the CIPCollection of Institut Pasteur (CIP 110812)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110812