Strain identifier
BacDive ID: 2526
Type strain: 
Species: Caloranaerobacter azorensis
Strain Designation: MV1087
Strain history: <- E. Sargenton <- N. Wery; MV1087
NCBI tax ID(s): 1121264 (strain), 116090 (species)
version 8.1 (current version)
General
@ref: 4937
BacDive-ID: 2526
DSM-Number: 13643
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Caloranaerobacter azorensis MV1087 is an anaerobe, thermophilic bacterium that was isolated from deep-sea hydrothermal chimney.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121264 | strain |
| 116090 | species |
strain history
- @ref: 4937
- history: <- E. Sargenton <- N. Wery; MV1087
doi: 10.13145/bacdive2526.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Caloranaerobacter
- species: Caloranaerobacter azorensis
- full scientific name: Caloranaerobacter azorensis Wery et al. 2001
@ref: 4937
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Caloranaerobacter
species: Caloranaerobacter azorensis
full scientific name: Caloranaerobacter azorensis Wery et al. 2001
strain designation: MV1087
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4937
- name: MARINITOGA MEDIUM (DSMZ Medium 904)
- growth: yes
- link: https://mediadive.dsmz.de/medium/904
- composition: Name: MARINITOGA MEDIUM (DSMZ Medium 904) Composition: Sea Salt 30.0 g/l PIPES 6.0 g/l D-Glucose 2.5 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 4937
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4937
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4937
- sample type: deep-sea hydrothermal chimney
- geographic location: Mid-Atlantic Ridge, Lucky Strike hydrothermal vent site, depth 1650 m
- country: Portugal
- origin.country: PRT
- continent: Europe
- latitude: 37.2833
- longitude: -32.2667
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_29456.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_3212;97_10646;98_13050;99_29456&stattab=map
- Last taxonomy: Caloranaerobacter azorensis subclade
- 16S sequence: AJ272422
- Sequence Identity:
- Total samples: 5
- aquatic counts: 2
- animal counts: 3
Safety information
risk assessment
- @ref: 4937
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4937
- description: Anaerobic thermophile MV1087 16S rRNA gene
- accession: AJ272422
- length: 1443
- database: ena
- NCBI tax ID: 1121264
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Caloranaerobacter azorensis DSM 13643 | GCA_900129995 | scaffold | ncbi | 1121264 |
| 66792 | Caloranaerobacter azorensis DSM 13643 | 1121264.4 | wgs | patric | 1121264 |
| 66792 | Caloranaerobacter azorensis DSM 13643 | 2585428077 | draft | img | 1121264 |
GC content
- @ref: 4937
- GC-content: 27
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.905 | no |
| flagellated | no | 78.297 | no |
| gram-positive | no | 55.14 | no |
| anaerobic | yes | 99.43 | no |
| aerobic | no | 98.006 | no |
| halophile | no | 86.944 | no |
| spore-forming | yes | 86.256 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 91.819 | no |
| glucose-ferment | yes | 58.855 | no |
External links
@ref: 4937
culture collection no.: DSM 13643, CNCM I-2543
straininfo link
- @ref: 72060
- straininfo: 49501
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11594610 | Caloranaerobacter azorensis gen. nov., sp. nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent. | Wery N, Moricet JM, Cueff V, Jean J, Pignet P, Lesongeur F, Cambon-Bonavita MA, Barbier G | Int J Syst Evol Microbiol | 10.1099/00207713-51-5-1789 | 2001 | Bacteria, Anaerobic/*classification/genetics/growth & development/*isolation & purification/ultrastructure, Culture Media, DNA, Ribosomal/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Temperature | Cultivation |
| Phylogeny | 19648349 | Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov. | Yokoyama H, Wagner ID, Wiegel J | Int J Syst Evol Microbiol | 10.1099/ijs.0.011379-0 | 2009 | Anaerobiosis, Animals, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Feces/*microbiology, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/metabolism, Hot Temperature, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sheep, Xylose/metabolism | Metabolism |
| Phylogeny | 20173012 | Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil. | Rezgui R, Ben Ali Gam Z, Ben Hamed S, Fardeau ML, Cayol JL, Maaroufi A, Labat M | Int J Syst Evol Microbiol | 10.1099/ijs.0.017715-0 | 2010 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Petroleum, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Soil Pollutants, Temperature, Tunisia | Genetics |
| Phylogeny | 25736413 | Caloranaerobacter ferrireducens sp. nov., an anaerobic, thermophilic, iron (III)-reducing bacterium isolated from deep-sea hydrothermal sulfide deposits. | Zeng X, Zhang Z, Li X, Jebbar M, Alain K, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.000165 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ferric Compounds/metabolism, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification, Hydrothermal Vents/*microbiology, Iron, Molecular Sequence Data, Pacific Ocean, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfides | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4937 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13643) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13643 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72060 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49501.1 | StrainInfo: A central database for resolving microbial strain identifiers |