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Strain identifier

BacDive ID: 2507

Type strain: No

Species: Sarcina ventriculi

Strain Designation: 23

Strain history: <- H. Wilmanns, 23

NCBI tax ID(s): 1267 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23

BacDive-ID: 2507

DSM-Number: 286

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, polysaccharide production, human pathogen

description: Sarcina ventriculi 23 is an anaerobe, mesophilic human pathogen that produces polysaccharides and was isolated from soil.

NCBI tax id

  • NCBI tax id: 1267
  • Matching level: species

strain history: <- H. Wilmanns, 23

doi: 10.13145/bacdive2507.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Sarcina
  • species: Sarcina ventriculi
  • full scientific name: Sarcina ventriculi Goodsir 1842 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Zymosarcina ventriculi
    20215Clostridium ventriculi

@ref: 23

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Sarcina

species: Sarcina ventriculi

full scientific name: Sarcina ventriculi Goodsir 1842

strain designation: 23

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 80.853

Culture and growth conditions

culture medium

  • @ref: 23
  • name: SARCINA MEDIUM (DSMZ Medium 21)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/21
  • composition: Name: SARCINA MEDIUM (DSMZ Medium 21) Composition: Glucose 30.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Distilled water

culture temp

  • @ref: 23
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
23anaerobe
69480anaerobe99.477

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 43.821

compound production

  • @ref: 23
  • compound: cellulose

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 95.456

murein

  • @ref: 23
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

Isolation, sampling and environmental information

isolation

  • @ref: 23
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_8249.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_3792;97_4675;98_6005;99_8249&stattab=map
  • Last taxonomy: Clostridium ventriculi subclade
  • 16S sequence: X76649
  • Sequence Identity:
  • Total samples: 7111
  • soil counts: 148
  • aquatic counts: 417
  • animal counts: 6457
  • plant counts: 89

Safety information

risk assessment

  • @ref: 23
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: S.ventriculi (DSM 286) 16S rRNA gene
  • accession: X76649
  • length: 1461
  • database: ena
  • NCBI tax ID: 1267

External links

@ref: 23

culture collection no.: DSM 286, ATCC 29068

straininfo link

@refpassport
20218http://www.straininfo.net/strains/106373
20218http://www.straininfo.net/strains/106372

literature

  • topic: Phylogeny
  • Pubmed-ID: 7520746
  • title: Phylogenetic placement of Sarcina ventriculi and Sarcina maxima within group I Clostridium, a possible problem for future revision of the genus Clostridium. Request for an opinion.
  • authors: Willems A, Collins MD
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-44-3-591
  • year: 1994
  • mesh: Clostridium/*classification/genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sarcina/*classification/genetics, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
23Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 286)https://www.dsmz.de/collection/catalogue/details/culture/DSM-286
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)