Strain identifier
BacDive ID: 2507
Type strain: 
Species: Sarcina ventriculi
Strain Designation: 23
Strain history: <- H. Wilmanns, 23
NCBI tax ID(s): 1267 (species)
version 8.1 (current version)
General
@ref: 23
BacDive-ID: 2507
DSM-Number: 286
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, polysaccharide production, human pathogen
description: Sarcina ventriculi 23 is an anaerobe, mesophilic human pathogen that produces polysaccharides and was isolated from soil.
NCBI tax id
- NCBI tax id: 1267
- Matching level: species
strain history
- @ref: 23
- history: <- H. Wilmanns, 23
doi: 10.13145/bacdive2507.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Sarcina
- species: Sarcina ventriculi
- full scientific name: Sarcina ventriculi Goodsir 1842 (Approved Lists 1980)
synonyms
@ref synonym 20215 Zymosarcina ventriculi 20215 Clostridium ventriculi
@ref: 23
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Sarcina
species: Sarcina ventriculi
full scientific name: Sarcina ventriculi Goodsir 1842
strain designation: 23
type strain: no
Culture and growth conditions
culture medium
- @ref: 23
- name: SARCINA MEDIUM (DSMZ Medium 21)
- growth: yes
- link: https://mediadive.dsmz.de/medium/21
- composition: Name: SARCINA MEDIUM (DSMZ Medium 21) Composition: Glucose 30.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Distilled water
culture temp
- @ref: 23
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 23
- oxygen tolerance: anaerobe
compound production
- @ref: 23
- compound: cellulose
murein
- @ref: 23
- murein short key: A41.01
- type: A3gamma LL-Dpm-Gly
Isolation, sampling and environmental information
isolation
- @ref: 23
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_8249.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_3792;97_4675;98_6005;99_8249&stattab=map
- Last taxonomy: Clostridium ventriculi subclade
- 16S sequence: X76649
- Sequence Identity:
- Total samples: 7111
- soil counts: 148
- aquatic counts: 417
- animal counts: 6457
- plant counts: 89
Safety information
risk assessment
- @ref: 23
- pathogenicity human: yes, in single cases
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: S.ventriculi (DSM 286) 16S rRNA gene
- accession: X76649
- length: 1461
- database: ena
- NCBI tax ID: 1267
External links
@ref: 23
culture collection no.: DSM 286, ATCC 29068
straininfo link
- @ref: 72043
- straininfo: 39343
literature
- topic: Phylogeny
- Pubmed-ID: 7520746
- title: Phylogenetic placement of Sarcina ventriculi and Sarcina maxima within group I Clostridium, a possible problem for future revision of the genus Clostridium. Request for an opinion.
- authors: Willems A, Collins MD
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-44-3-591
- year: 1994
- mesh: Clostridium/*classification/genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sarcina/*classification/genetics, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 23 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 286) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-286 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72043 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39343.1 | StrainInfo: A central database for resolving microbial strain identifiers |