Strain identifier
BacDive ID: 2500
Type strain: 
Species: Anoxynatronum sibiricum
Strain Designation: Z-7981
Strain history: <- T. N. Zhilina, INMI; Z-7981
NCBI tax ID(s): 210623 (species)
version 8.1 (current version)
General
@ref: 5692
BacDive-ID: 2500
DSM-Number: 15060
keywords: 16S sequence, Bacteria, obligate anaerobe
description: Anoxynatronum sibiricum Z-7981 is an obligate anaerobe bacterium that was isolated from mixture of mud and surface cyanobacterial mat from the soda lake Nizhnee Beloye.
NCBI tax id
- NCBI tax id: 210623
- Matching level: species
strain history
- @ref: 5692
- history: <- T. N. Zhilina, INMI; Z-7981
doi: 10.13145/bacdive2500.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Anoxynatronum
- species: Anoxynatronum sibiricum
- full scientific name: Anoxynatronum sibiricum Garnova and Zhilina 2003
@ref: 5692
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Anoxynatronum
species: Anoxynatronum sibiricum
full scientific name: Anoxynatronum sibiricum Garnova and Zhilina 2003
strain designation: Z-7981
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 5692
- oxygen tolerance: obligate anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5692
- sample type: mixture of mud and surface cyanobacterial mat from the soda lake Nizhnee Beloye
- geographic location: southeastern Transbaikal region
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Microbial community | #Microbial mat |
| #Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_105096.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1869;96_19681;97_24431;98_30905;99_105096&stattab=map
- Last taxonomy: Anoxynatronum sibiricum
- 16S sequence: AF522323
- Sequence Identity:
- Total samples: 6
- aquatic counts: 5
- animal counts: 1
Safety information
risk assessment
- @ref: 5692
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5692
- description: Anoxynatronum sibiricum 16S ribosomal RNA gene, partial sequence
- accession: AF522323
- length: 1409
- database: ena
- NCBI tax ID: 210623
External links
@ref: 5692
culture collection no.: DSM 15060, Uniqem U218
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12768452 | Anoxynatronum sibiricum gen.nov., sp.nov. alkaliphilic saccharolytic anaerobe from cellulolytic community of Nizhnee Beloe (Transbaikal region). | Garnova ES, Zhilina TN, Tourova TP, Lysenko AM | Extremophiles | 10.1007/s00792-002-0312-5 | 2003 | Bacteria, Anaerobic/*classification/*genetics, Carbohydrate Metabolism, Cellulose/chemistry, Culture Media/pharmacology, DNA/ultrastructure, DNA, Ribosomal/*genetics, Fermentation, Genotype, Hydrogen-Ion Concentration, Ions, Iron/chemistry, Models, Chemical, Phenotype, Phylogeny, Protein Binding, RNA, Ribosomal, 16S/metabolism, Sodium/chemistry/pharmacology, Substrate Specificity, Temperature | Metabolism |
| Phylogeny | 28984544 | Anoxynatronum buryatiense sp. nov., an anaerobic alkaliphilic bacterium from a low mineralization soda lake in Buryatia, Russia. | Ryzhmanova Y, Oshurkova V, Troshina O, Abashina T, Ariskina E, Avtukh A, Shcherbakova V | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002365 | 2017 | Alkalies, Bacterial Typing Techniques, Base Composition, Clostridiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydrogen-Ion Concentration, Lakes/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5692 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15060) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15060 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |