Strain identifier
BacDive ID: 2498
Type strain: 
Species: Desulfurispira natronophila
Strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; AHT11 <- D. Y. Sorokin {2008}
NCBI tax ID(s): 682562 (species)
version 7.1 (current version)
General
@ref: 16055
BacDive-ID: 2498
DSM-Number: 22071
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfurispira natronophila DSM 22071 is an anaerobe, mesophilic bacterium that was isolated from sediments from a hypersaline soda lake.
NCBI tax id
- NCBI tax id: 682562
- Matching level: species
strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; AHT11 <- D. Y. Sorokin {2008}
doi: 10.13145/bacdive2498.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chrysiogenota
- domain: Bacteria
- phylum: Chrysiogenota
- class: Chrysiogenetes
- order: Chrysiogenales
- family: Chrysiogenaceae
- genus: Desulfurispira
- species: Desulfurispira natronophila
- full scientific name: Desulfurispira natronophila Sorokin and Muyzer 2010
@ref: 16055
domain: Bacteria
phylum: Chrysiogenetes
class: Chrysiogenetes
order: Chrysiogenales
family: Chrysiogenaceae
genus: Desulfurispira
species: Desulfurispira natronophila
full scientific name: Desulfurispira natronophila Sorokin and Muyzer 2010
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.01
Culture and growth conditions
culture medium
- @ref: 16055
- name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1166
- composition: Name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166; with strain-specific modifications) Composition: Na2CO3 21.9342 g/l NaHCO3 7.97607 g/l NaCl 5.98205 g/l Na2S2O3 x 5 H2O 4.98504 g/l Elemental sulfur 2.99103 g/l Na2SO4 2.79163 g/l Na acetate 1.59521 g/l K2HPO4 0.997009 g/l Na2S x 9 H2O 0.239282 g/l MgCl2 x 6 H2O 0.199402 g/l NH4Cl 0.199402 g/l Yeast extract 0.0498504 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000199402 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 16055
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 16055 | anaerobe | |
| 69480 | anaerobe | 98.771 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 96.859
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 88.856
Isolation, sampling and environmental information
isolation
- @ref: 16055
- sample type: sediments from a hypersaline soda lake
- geographic location: south-western Siberia, Altai
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Saline | |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_173904.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16434;96_64737;97_83985;98_113868;99_173904&stattab=map
- Last taxonomy: Desulfurispira natronophila subclade
- 16S sequence: GQ922842
- Sequence Identity:
- Total samples: 29
- soil counts: 1
- aquatic counts: 26
- animal counts: 2
Safety information
risk assessment
- @ref: 16055
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16055
- description: Desulfurispira natronophila strain AHT11 16S ribosomal RNA gene, partial sequence
- accession: GQ922842
- length: 1408
- database: ena
- NCBI tax ID: 682562
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfurispira natronophila DSM 22071 | GCA_014203025 | scaffold | ncbi | 682562 |
| 66792 | Desulfurispira natronophila strain DSM 22071 | 682562.3 | wgs | patric | 682562 |
| 66792 | Desulfurispira natronophila DSM 22071 | 2861683924 | draft | img | 682562 |
| 66792 | Gemmatimonadaceae bacterium time.spades.CONCOCT.1kb_032 | GCA_019745365 | contig | patric | 2026741 |
GC content
- @ref: 16055
- GC-content: 49.2
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 16055
culture collection no.: DSM 22071, UNIQEM U758, AHT 11
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/856860 |
| 20218 | http://www.straininfo.net/strains/856861 |
literature
- topic: Phylogeny
- Pubmed-ID: 20407798
- title: Desulfurispira natronophila gen. nov. sp. nov.: an obligately anaerobic dissimilatory sulfur-reducing bacterium from soda lakes.
- authors: Sorokin DY, Muyzer G
- journal: Extremophiles
- DOI: 10.1007/s00792-010-0314-7
- year: 2010
- mesh: Alkalies, Anaerobiosis, Bioreactors, Hydrogen-Ion Concentration, Oxidation-Reduction, Peptococcaceae/classification/growth & development/*isolation & purification/metabolism, Phylogeny, Sulfur/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16055 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22071) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22071 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |