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Strain identifier

BacDive ID: 2498

Type strain: Yes

Species: Desulfurispira natronophila

Strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; AHT11 <- D. Y. Sorokin {2008}

NCBI tax ID(s): 682562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16055

BacDive-ID: 2498

DSM-Number: 22071

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfurispira natronophila DSM 22071 is an anaerobe, mesophilic bacterium that was isolated from sediments from a hypersaline soda lake.

NCBI tax id

  • NCBI tax id: 682562
  • Matching level: species

strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; AHT11 <- D. Y. Sorokin {2008}

doi: 10.13145/bacdive2498.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/chrysiogenota
  • domain: Bacteria
  • phylum: Chrysiogenota
  • class: Chrysiogenetes
  • order: Chrysiogenales
  • family: Chrysiogenaceae
  • genus: Desulfurispira
  • species: Desulfurispira natronophila
  • full scientific name: Desulfurispira natronophila Sorokin and Muyzer 2010

@ref: 16055

domain: Bacteria

phylum: Chrysiogenetes

class: Chrysiogenetes

order: Chrysiogenales

family: Chrysiogenaceae

genus: Desulfurispira

species: Desulfurispira natronophila

full scientific name: Desulfurispira natronophila Sorokin and Muyzer 2010

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.01

Culture and growth conditions

culture medium

  • @ref: 16055
  • name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1166
  • composition: Name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166; with strain-specific modifications) Composition: Na2CO3 21.9342 g/l NaHCO3 7.97607 g/l NaCl 5.98205 g/l Na2S2O3 x 5 H2O 4.98504 g/l Elemental sulfur 2.99103 g/l Na2SO4 2.79163 g/l Na acetate 1.59521 g/l K2HPO4 0.997009 g/l Na2S x 9 H2O 0.239282 g/l MgCl2 x 6 H2O 0.199402 g/l NH4Cl 0.199402 g/l Yeast extract 0.0498504 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000199402 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 16055
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
16055anaerobe
69480anaerobe98.771

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.859

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 88.856

Isolation, sampling and environmental information

isolation

  • @ref: 16055
  • sample type: sediments from a hypersaline soda lake
  • geographic location: south-western Siberia, Altai
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Condition#Saline
#Condition#Alkaline

taxonmaps

  • @ref: 69479
  • File name: preview.99_173904.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16434;96_64737;97_83985;98_113868;99_173904&stattab=map
  • Last taxonomy: Desulfurispira natronophila subclade
  • 16S sequence: GQ922842
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 1
  • aquatic counts: 26
  • animal counts: 2

Safety information

risk assessment

  • @ref: 16055
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16055
  • description: Desulfurispira natronophila strain AHT11 16S ribosomal RNA gene, partial sequence
  • accession: GQ922842
  • length: 1408
  • database: ena
  • NCBI tax ID: 682562

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfurispira natronophila DSM 22071GCA_014203025scaffoldncbi682562
66792Desulfurispira natronophila strain DSM 22071682562.3wgspatric682562
66792Desulfurispira natronophila DSM 220712861683924draftimg682562
66792Gemmatimonadaceae bacterium time.spades.CONCOCT.1kb_032GCA_019745365contigpatric2026741

GC content

  • @ref: 16055
  • GC-content: 49.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 16055

culture collection no.: DSM 22071, UNIQEM U758, AHT 11

straininfo link

@refpassport
20218http://www.straininfo.net/strains/856860
20218http://www.straininfo.net/strains/856861

literature

  • topic: Phylogeny
  • Pubmed-ID: 20407798
  • title: Desulfurispira natronophila gen. nov. sp. nov.: an obligately anaerobic dissimilatory sulfur-reducing bacterium from soda lakes.
  • authors: Sorokin DY, Muyzer G
  • journal: Extremophiles
  • DOI: 10.1007/s00792-010-0314-7
  • year: 2010
  • mesh: Alkalies, Anaerobiosis, Bioreactors, Hydrogen-Ion Concentration, Oxidation-Reduction, Peptococcaceae/classification/growth & development/*isolation & purification/metabolism, Phylogeny, Sulfur/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16055Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22071)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22071
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)