Strain identifier
BacDive ID: 2495
Type strain: 
Species: Chrysiogenes arsenatis
Strain Designation: BAL-1
Strain history: <- J. M. Macy, La Trobe University, Victoria, Australia; BAL-1 <- J. M. Macy {1995}
NCBI tax ID(s): 118005 (strain), 309797 (species)
version 8.1 (current version)
General
@ref: 4536
BacDive-ID: 2495
DSM-Number: 11915
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Chrysiogenes arsenatis BAL-1 is an anaerobe, mesophilic bacterium that was isolated from mud from a reed bed.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 118005 | strain |
| 309797 | species |
strain history
- @ref: 4536
- history: <- J. M. Macy, La Trobe University, Victoria, Australia; BAL-1 <- J. M. Macy {1995}
doi: 10.13145/bacdive2495.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chrysiogenota
- domain: Bacteria
- phylum: Chrysiogenota
- class: Chrysiogenia
- order: Chrysiogenales
- family: Chrysiogenaceae
- genus: Chrysiogenes
- species: Chrysiogenes arsenatis
- full scientific name: Chrysiogenes arsenatis Macy et al. 1996
@ref: 4536
domain: Bacteria
phylum: Chrysiogenetes
class: Chrysiogenetes
order: Chrysiogenales
family: Chrysiogenaceae
genus: Chrysiogenes
species: Chrysiogenes arsenatis
full scientific name: Chrysiogenes arsenatis Macy et al. 1996
strain designation: BAL-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4536
- name: CHRYSIOGENES MEDIUM (DSMZ Medium 818)
- growth: yes
- link: https://mediadive.dsmz.de/medium/818
- composition: Name: CHRYSIOGENES MEDIUM (DSMZ Medium 818) Composition: NaCl 1.19641 g/l NaHCO3 0.598205 g/l Na-acetate 0.498504 g/l KNO3 0.498504 g/l MgCl2 x 6 H2O 0.398804 g/l Na2SO4 0.299103 g/l NH4Cl 0.299103 g/l KCl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l Na2-EDTA x 2 H2O 0.00518445 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
- @ref: 4536
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4536
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4536
- sample type: mud from a reed bed
- geographic location: Ballarat Goldfields
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_3659.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16434;96_1893;97_2275;98_2798;99_3659&stattab=map
- Last taxonomy: Chrysiogenes arsenatis subclade
- 16S sequence: X81319
- Sequence Identity:
- Total samples: 922
- soil counts: 82
- aquatic counts: 326
- animal counts: 505
- plant counts: 9
Safety information
risk assessment
- @ref: 4536
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4536
- description: Chrysiogenes arsenatis 16S rRNA gene
- accession: X81319
- length: 1511
- database: ena
- NCBI tax ID: 118005
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chrysiogenes arsenatis DSM 11915 | GCA_000469585 | scaffold | ncbi | 118005 |
| 66792 | Chrysiogenes arsenatis DSM 11915 | 118005.9 | wgs | patric | 118005 |
| 66792 | Chrysiogenes arsenatis DSM 11915 | 2579778963 | draft | img | 118005 |
GC content
- @ref: 4536
- GC-content: 49
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.745 | no |
| flagellated | no | 68.331 | no |
| gram-positive | no | 99.261 | no |
| anaerobic | yes | 98.157 | yes |
| aerobic | no | 96.113 | no |
| halophile | no | 86.923 | no |
| spore-forming | no | 89.173 | no |
| thermophile | no | 87.136 | yes |
| glucose-util | no | 66.842 | no |
| glucose-ferment | no | 89.627 | no |
External links
@ref: 4536
culture collection no.: DSM 11915, ATCC 700172
straininfo link
- @ref: 72032
- straininfo: 43805
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 8863450 | Chrysiogenes arsenatis gen. nov., sp. nov., a new arsenate-respiring bacterium isolated from gold mine wastewater. | Macy JM, Nunan K, Hagen KD, Dixon DR, Harbour PJ, Cahill M, Sly LI | Int J Syst Bacteriol | 10.1099/00207713-46-4-1153 | 1996 | Arsenates/*metabolism, Bacteria, Anaerobic/*classification/growth & development/isolation & purification, Base Sequence, Gold, Mining, Molecular Sequence Data, RNA, Ribosomal, 16S/chemistry, *Water Microbiology | Genetics |
| Genetics | 24233593 | Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. | Coil DA, Lo JR, Chen R, Ward N, Robb FT, Eisen JA | Genome Announc | 10.1128/genomeA.00953-13 | 2013 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4536 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11915) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11915 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72032 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43805.1 | StrainInfo: A central database for resolving microbial strain identifiers |