Strain identifier

BacDive ID: 249

Type strain: No

Species: Aeromonas enteropelogenes

Strain Designation: AH2

Strain history: CIP <- 1993, A.M. Carnahan, Maryland Univ., Maryland, USA, Aeromonas trota <- T. Chakraborty, Würzburg, Germany: strain AH2 <- Sanyal, Varanasi, India

NCBI tax ID(s): 29489 (species)

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General

@ref: 3114

BacDive-ID: 249

DSM-Number: 7312

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Aeromonas enteropelogenes AH2 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from human stool.

NCBI tax id

  • NCBI tax id: 29489
  • Matching level: species

strain history

@refhistory
3114<- ATCC <- A.M. Carnahan, AH2 <- T. Chakrabarty <- Sanyal
67770ATCC 49657 <-- A. M. Carnahan AH2 <-- T. Chakrabarty <-- D. Sanyal.
119079CIP <- 1993, A.M. Carnahan, Maryland Univ., Maryland, USA, Aeromonas trota <- T. Chakraborty, Würzburg, Germany: strain AH2 <- Sanyal, Varanasi, India

doi: 10.13145/bacdive249.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas enteropelogenes
  • full scientific name: Aeromonas enteropelogenes Schubert et al. 1991

  • synonyms

    • @ref: 20215
    • synonym: Aeromonas trota

@ref: 3114

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas enteropelogenes

full scientific name: Aeromonas enteropelogenes Schubert et al. 1991

strain designation: AH2

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.26
6948099.992negative
119079yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3114REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
38460MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119079CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
119079CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
3114positivegrowth28mesophilic
38460positivegrowth37mesophilic
67770positivegrowth37mesophilic
119079positivegrowth37-41
119079nogrowth10psychrophilic
119079nogrowth15psychrophilic
119079nogrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119079
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.971

halophily

@refsaltgrowthtested relationconcentration
119079NaClpositivegrowth0-4 %
119079NaClnogrowth6 %
119079NaClnogrowth8 %
119079NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine-degradation18257
68368lysine+degradation25094
68368arginine+hydrolysis29016
119079nitrate+reduction17632
119079nitrite+reduction16301
119079sodium thiosulfate-builds gas from132112

antibiotic resistance

  • @ref: 119079
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
11907935581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
119079oxidase+
119079beta-galactosidase+3.2.1.23
119079alcohol dehydrogenase+1.1.1.1
119079gelatinase-
119079amylase+
119079DNase+
119079catalase+1.11.1.6
119079lecithinase-
119079lysine decarboxylase-4.1.1.18
119079ornithine decarboxylase-4.1.1.17
119079urease+3.5.1.5

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3114+++-+---+-+++-------+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119079+---+----++++----+---+----++---+---++------+--+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119079---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
3114human stoolVarasaniIndiaINDAsia
67770Stool
119079Human, StoolIndiaINDAsia1986

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_19.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_19&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X60415
  • Sequence Identity:
  • Total samples: 1087
  • soil counts: 45
  • aquatic counts: 400
  • animal counts: 595
  • plant counts: 47

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
31142Risk group (German classification)
1190791Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Aeromonas trota 16S rRNA gene, strain ATCC 49657
  • accession: X60415
  • length: 1503
  • database: ena
  • NCBI tax ID: 29489

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas enteropelogenes strain FDAARGOS_151029489.29completepatric29489
66792Aeromonas enteropelogenes CECT 42552645727889draftimg29489
67770Aeromonas enteropelogenes CECT 4255TGCA_000820205scaffoldncbi29489
66792Aeromonas enteropelogenes strain FDAARGOS_151029489.43completepatric29489
66792Aeromonas enteropelogenes strain FDAARGOS_151029489.33completepatric29489
66792Aeromonas enteropelogenes strain FDAARGOS_151029489.39completepatric29489

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno99.067no
anaerobicno97.248no
halophileno82.325no
spore-formingno96.078no
glucose-utilyes87.628no
motileyes92.576no
flagellatedyes93.364no
aerobicyes84.389no
thermophileno99.155yes
glucose-fermentyes89.25yes

External links

@ref: 3114

culture collection no.: DSM 7312, ATCC 49657, LMG 12223, JCM 8315, BCRC 15866, CCM 4368, CCUG 29544, CCUG 30367, CECT 4255, CECT 4256, CIP 103677, CNCTC 5358

straininfo link

  • @ref: 69931
  • straininfo: 7843

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1864939Aeromonas trota sp. nov., an ampicillin-susceptible species isolated from clinical specimens.Carnahan AM, Chakraborty T, Fanning GR, Verma D, Ali A, Janda JM, Joseph SWJ Clin Microbiol10.1128/jcm.29.6.1206-1210.19911991Aeromonas/drug effects/genetics/*isolation & purification, Ampicillin/pharmacology, Asia, Bacterial Infections/etiology, DNA, Bacterial/genetics, Drug Resistance, Microbial, Feces/microbiology, Humans, Nucleic Acid Hybridization, Phenotype, Species SpecificityPathogenicity
Phylogeny12508855DNA-DNA reassociation and phenotypic data indicate synonymy between Aeromonas enteropelogenes Schubert et al. 1990 and Aeromonas trota Carnahan et al. 1991.Huys G, Denys R, Swings JInt J Syst Evol Microbiol10.1099/00207713-52-6-19692002Aeromonas/*classification/*genetics/metabolism, DNA, Bacterial/*genetics, Nucleic Acid Hybridization, Phenotype, Phylogeny, Species Specificity, Terminology as TopicPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3114Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7312)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7312
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38460Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15501
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69931Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7843.1StrainInfo: A central database for resolving microbial strain identifiers
119079Curators of the CIPCollection of Institut Pasteur (CIP 103677)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103677