Strain identifier
BacDive ID: 24858
Type strain:
Species: Blastococcus haudaquaticus
Strain Designation: AT 7-14
Strain history: H.-P. Klenk; DSMZ, Germany; AT 7-14 <-- F. Rainey.
NCBI tax ID(s): 1873459 (species)
General
@ref: 18984
BacDive-ID: 24858
DSM-Number: 44270
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Blastococcus haudaquaticus AT 7-14 is a mesophilic, Gram-positive bacterium of the family Geodermatophilaceae.
NCBI tax id
- NCBI tax id: 1873459
- Matching level: species
strain history
@ref | history |
---|---|
18984 | <- F. Rainey, AT 7-14 |
67770 | H.-P. Klenk; DSMZ, Germany; AT 7-14 <-- F. Rainey. |
doi: 10.13145/bacdive24858.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Blastococcus
- species: Blastococcus haudaquaticus
- full scientific name: Blastococcus haudaquaticus Montero-Calasanz et al. 2023
@ref: 18984
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Blastococcus
species: Blastococcus sp.
full scientific name: Blastococcus sp.
strain designation: AT 7-14
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
18984 | https://www.dsmz.de/microorganisms/photos/DSM_44270.jpg | Medium 714 25°C | © Leibniz-Institut DSMZ |
66793 | EM_DSM_44270_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_44270_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_44270_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_44270_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_44270_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18984 | GEO-MEDIUM (DSMZ Medium 714) | yes | https://mediadive.dsmz.de/medium/714 | Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water |
18984 | PLATE COUNT AGAR (DSMZ Medium 464) | yes | https://mediadive.dsmz.de/medium/464 | Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18984 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.644
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_17988.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_1096;97_2139;98_2849;99_17988&stattab=map
- Last taxonomy: Blastococcus
- 16S sequence: MH479062
- Sequence Identity:
- Total samples: 1821
- soil counts: 677
- aquatic counts: 249
- animal counts: 701
- plant counts: 194
Sequence information
16S sequences
- @ref: 67770
- description: Blastococcus sp. strain AT 7-14, DSM 44270 16S ribosomal RNA gene, partial sequence
- accession: MH479062
- length: 1414
- database: ena
- NCBI tax ID: 1873459
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Blastococcus haudaquaticus DSM 44270 | GCA_900230285 | contig | ncbi | 1938745 |
66792 | Blastococcus sp. DSM 44270 | 1938745.3 | wgs | patric | 1938745 |
66792 | Blastococcus haudaquaticus DSM 44270 | 2728369258 | draft | img | 1938745 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 66 | no |
motile | yes | 71.715 | no |
gram-positive | yes | 91.649 | no |
anaerobic | no | 98.646 | no |
aerobic | yes | 91.568 | no |
halophile | no | 91.34 | no |
spore-forming | no | 71.326 | no |
glucose-util | yes | 85.338 | no |
flagellated | no | 93.249 | no |
thermophile | no | 98.892 | yes |
glucose-ferment | no | 91.202 | no |
External links
@ref: 18984
culture collection no.: DSM 44270, JCM 18932
straininfo link
- @ref: 88671
- straininfo: 402836
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
18984 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44270) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44270 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
88671 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402836.1 | StrainInfo: A central database for resolving microbial strain identifiers |