Strain identifier

BacDive ID: 24858

Type strain: No

Species: Blastococcus haudaquaticus

Strain Designation: AT 7-14

Strain history: H.-P. Klenk; DSMZ, Germany; AT 7-14 <-- F. Rainey.

NCBI tax ID(s): 1873459 (species)

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General

@ref: 18984

BacDive-ID: 24858

DSM-Number: 44270

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Blastococcus haudaquaticus AT 7-14 is a mesophilic, Gram-positive bacterium of the family Geodermatophilaceae.

NCBI tax id

  • NCBI tax id: 1873459
  • Matching level: species

strain history

@refhistory
18984<- F. Rainey, AT 7-14
67770H.-P. Klenk; DSMZ, Germany; AT 7-14 <-- F. Rainey.

doi: 10.13145/bacdive24858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Blastococcus
  • species: Blastococcus haudaquaticus
  • full scientific name: Blastococcus haudaquaticus Montero-Calasanz et al. 2023

@ref: 18984

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Blastococcus

species: Blastococcus sp.

full scientific name: Blastococcus sp.

strain designation: AT 7-14

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

@refmultimedia contentcaptionintellectual property rights
18984https://www.dsmz.de/microorganisms/photos/DSM_44270.jpgMedium 714 25°C© Leibniz-Institut DSMZ
66793EM_DSM_44270_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44270_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44270_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44270_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44270_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18984GEO-MEDIUM (DSMZ Medium 714)yeshttps://mediadive.dsmz.de/medium/714Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water
18984PLATE COUNT AGAR (DSMZ Medium 464)yeshttps://mediadive.dsmz.de/medium/464Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18984positivegrowth25mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.644

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_17988.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_1096;97_2139;98_2849;99_17988&stattab=map
  • Last taxonomy: Blastococcus
  • 16S sequence: MH479062
  • Sequence Identity:
  • Total samples: 1821
  • soil counts: 677
  • aquatic counts: 249
  • animal counts: 701
  • plant counts: 194

Sequence information

16S sequences

  • @ref: 67770
  • description: Blastococcus sp. strain AT 7-14, DSM 44270 16S ribosomal RNA gene, partial sequence
  • accession: MH479062
  • length: 1414
  • database: ena
  • NCBI tax ID: 1873459

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Blastococcus haudaquaticus DSM 44270GCA_900230285contigncbi1938745
66792Blastococcus sp. DSM 442701938745.3wgspatric1938745
66792Blastococcus haudaquaticus DSM 442702728369258draftimg1938745

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno66no
motileyes71.715no
gram-positiveyes91.649no
anaerobicno98.646no
aerobicyes91.568no
halophileno91.34no
spore-formingno71.326no
glucose-utilyes85.338no
flagellatedno93.249no
thermophileno98.892yes
glucose-fermentno91.202no

External links

@ref: 18984

culture collection no.: DSM 44270, JCM 18932

straininfo link

  • @ref: 88671
  • straininfo: 402836

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18984Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44270)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44270
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
88671Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402836.1StrainInfo: A central database for resolving microbial strain identifiers