Strain identifier
BacDive ID: 24839
Type strain: 
Species: Bacillus sp.
Strain Designation: PN 123
Strain history: <- P. Nielsen; PN 123
NCBI tax ID(s): 83428 (species)
version 9.3 (current version)
General
@ref: 20381
BacDive-ID: 24839
DSM-Number: 9820
keywords: Bacteria, mesophilic, Gram-negative
description: Bacillus sp. PN 123 is a mesophilic, Gram-negative bacterium of the family Bacillaceae.
NCBI tax id
- NCBI tax id: 83428
- Matching level: species
strain history
- @ref: 20381
- history: <- P. Nielsen; PN 123
doi: 10.13145/bacdive24839.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pseudobacillus 20215 Maribacillus 20215 Quasibacillus
@ref: 20381
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: PN 123
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 99.25
Culture and growth conditions
culture medium
- @ref: 20381
- name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
- growth: yes
- link: https://mediadive.dsmz.de/medium/31
- composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31; with strain-specific modifications) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaCl 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 20381
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
- @ref: 20381
- country: Denmark
- origin.country: DNK
- continent: Europe
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.25 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.563 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.065 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 59.757 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 75.302 | no |
External links
@ref: 20381
culture collection no.: DSM 9820, PD 456
straininfo link
- @ref: 88657
- straininfo: 113324
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20381 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9820 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9820) | |
| 88657 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID113324.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |