Strain identifier
BacDive ID: 24819
Type strain:
Species: Nitrososphaera viennensis
Strain Designation: EN76
Strain history: C. Schleper; Univ. of Vienna, Austria; EN76.
NCBI tax ID(s): 1034015 (species)
General
@ref: 21344
BacDive-ID: 24819
DSM-Number: 26422
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Nitrososphaera viennensis EN76 is a thermophilic archaeon that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 1034015
- Matching level: species
strain history
@ref | history |
---|---|
21344 | <- C. Schleper, Univ. Vienna, Fac. of Life Scs, Austria <- M. Stieglmeier and C. Schleper {2010} |
67770 | C. Schleper; Univ. of Vienna, Austria; EN76. |
doi: 10.13145/bacdive24819.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/nitrososphaerota
- domain: Archaea
- phylum: Nitrososphaerota
- class: Nitrososphaeria
- order: Nitrososphaerales
- family: Nitrososphaeraceae
- genus: Nitrososphaera
- species: Nitrososphaera viennensis
- full scientific name: Nitrososphaera viennensis Stieglmeier et al. 2014
synonyms
- @ref: 20215
- synonym: Nitrososphaera viennensis
@ref: 21344
domain: Archaea
phylum: Thaumarchaeota
class: Nitrososphaeria
order: Nitrososphaerales
family: Nitrososphaeraceae
genus: Nitrososphaera
species: Nitrososphaera viennensis
full scientific name: Nitrososphaera viennensis Stieglmeier et al. 2014
strain designation: EN76
type strain: yes
Morphology
colony morphology
- @ref: 21344
- incubation period: >14 days
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 42
- range: thermophilic
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
21344 | garden soil | Vienna, 9th, district | Austria | AUT | Europe |
67770 | Garden soil in Vienna |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Engineered | #Agriculture | #Garden |
taxonmaps
- @ref: 69479
- File name: preview.99_187304.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17831;96_68919;97_89571;98_121862;99_187304&stattab=map
- Last taxonomy: Nitrososphaera viennensis subclade
- 16S sequence: FR773157
- Sequence Identity:
- Total samples: 10445
- soil counts: 8092
- aquatic counts: 1057
- animal counts: 237
- plant counts: 1059
Sequence information
16S sequences
- @ref: 21344
- description: Nitrososphaera viennensis EN76 partial 16S rRNA gene, type strain EN76T
- accession: FR773157
- length: 1419
- database: ena
- NCBI tax ID: 926571
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Nitrososphaera viennensis EN76 | GCA_000698785 | complete | ncbi | 926571 |
66792 | Nitrososphaera viennensis EN76 | 2585427612 | complete | img | 926571 |
66792 | Nitrososphaera viennensis EN76 | 926571.7 | complete | patric | 926571 |
GC content
@ref | GC-content | method |
---|---|---|
21344 | 52.7 | |
67770 | 52.7 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 85.872 | no |
flagellated | no | 96.24 | no |
gram-positive | no | 95.729 | no |
anaerobic | no | 68.353 | no |
halophile | no | 91.555 | no |
spore-forming | no | 93.237 | no |
glucose-util | yes | 74.364 | no |
aerobic | yes | 53.677 | no |
thermophile | yes | 93.025 | yes |
glucose-ferment | no | 72.851 | no |
External links
@ref: 21344
culture collection no.: DSM 26422, JCM 19564
straininfo link
- @ref: 88640
- straininfo: 401566
literature
- topic: Phylogeny
- Pubmed-ID: 24907263
- title: Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota.
- authors: Stieglmeier M, Klingl A, Alves RJE, Rittmann SKR, Melcher M, Leisch N, Schleper C
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.063172-0
- year: 2014
- mesh: Ammonia/*metabolism, Austria, Base Composition, Crenarchaeota/*classification/genetics/isolation & purification, DNA, Archaeal/genetics, Glyceryl Ethers/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21344 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26422 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26422) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
88640 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401566.1 |