Strain identifier

BacDive ID: 24819

Type strain: Yes

Species: Nitrososphaera viennensis

Strain Designation: EN76

Strain history: C. Schleper; Univ. of Vienna, Austria; EN76.

NCBI tax ID(s): 1034015 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21344

BacDive-ID: 24819

DSM-Number: 26422

keywords: genome sequence, 16S sequence, Archaea, thermophilic

description: Nitrososphaera viennensis EN76 is a thermophilic archaeon that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 1034015
  • Matching level: species

strain history

@refhistory
21344<- C. Schleper, Univ. Vienna, Fac. of Life Scs, Austria <- M. Stieglmeier and C. Schleper {2010}
67770C. Schleper; Univ. of Vienna, Austria; EN76.

doi: 10.13145/bacdive24819.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/nitrososphaerota
  • domain: Archaea
  • phylum: Nitrososphaerota
  • class: Nitrososphaeria
  • order: Nitrososphaerales
  • family: Nitrososphaeraceae
  • genus: Nitrososphaera
  • species: Nitrososphaera viennensis
  • full scientific name: Nitrososphaera viennensis Stieglmeier et al. 2014
  • synonyms

    • @ref: 20215
    • synonym: Nitrososphaera viennensis

@ref: 21344

domain: Archaea

phylum: Thaumarchaeota

class: Nitrososphaeria

order: Nitrososphaerales

family: Nitrososphaeraceae

genus: Nitrososphaera

species: Nitrososphaera viennensis

full scientific name: Nitrososphaera viennensis Stieglmeier et al. 2014

strain designation: EN76

type strain: yes

Morphology

colony morphology

  • @ref: 21344
  • incubation period: >14 days

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 42
  • range: thermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21344garden soilVienna, 9th, districtAustriaAUTEurope
67770Garden soil in Vienna

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

taxonmaps

  • @ref: 69479
  • File name: preview.99_187304.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17831;96_68919;97_89571;98_121862;99_187304&stattab=map
  • Last taxonomy: Nitrososphaera viennensis subclade
  • 16S sequence: FR773157
  • Sequence Identity:
  • Total samples: 10445
  • soil counts: 8092
  • aquatic counts: 1057
  • animal counts: 237
  • plant counts: 1059

Sequence information

16S sequences

  • @ref: 21344
  • description: Nitrososphaera viennensis EN76 partial 16S rRNA gene, type strain EN76T
  • accession: FR773157
  • length: 1419
  • database: ena
  • NCBI tax ID: 926571

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nitrososphaera viennensis EN76GCA_000698785completencbi926571
66792Nitrososphaera viennensis EN762585427612completeimg926571
66792Nitrososphaera viennensis EN76926571.7completepatric926571

GC content

@refGC-contentmethod
2134452.7
6777052.7genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno85.872no
flagellatedno96.24no
gram-positiveno95.729no
anaerobicno68.353no
halophileno91.555no
spore-formingno93.237no
glucose-utilyes74.364no
aerobicyes53.677no
thermophileyes93.025yes
glucose-fermentno72.851no

External links

@ref: 21344

culture collection no.: DSM 26422, JCM 19564

straininfo link

  • @ref: 88640
  • straininfo: 401566

literature

  • topic: Phylogeny
  • Pubmed-ID: 24907263
  • title: Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota.
  • authors: Stieglmeier M, Klingl A, Alves RJE, Rittmann SKR, Melcher M, Leisch N, Schleper C
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.063172-0
  • year: 2014
  • mesh: Ammonia/*metabolism, Austria, Base Composition, Crenarchaeota/*classification/genetics/isolation & purification, DNA, Archaeal/genetics, Glyceryl Ethers/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21344Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26422Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26422)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88640Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401566.1