Strain identifier
BacDive ID: 24817
Type strain: 
Species: Draconibacterium orientale
Strain Designation: FH5
Strain history: <- Z.-J. Du, Shandong University at Weihai; FH5
NCBI tax ID(s): 1168034 (species)
version 8.1 (current version)
General
@ref: 21330
BacDive-ID: 24817
DSM-Number: 25947
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, animal pathogen
description: Draconibacterium orientale FH5 is a mesophilic, Gram-negative animal pathogen that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1168034
- Matching level: species
strain history
- @ref: 21330
- history: <- Z.-J. Du, Shandong University at Weihai; FH5
doi: 10.13145/bacdive24817.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prolixibacteraceae
- genus: Draconibacterium
- species: Draconibacterium orientale
- full scientific name: Draconibacterium orientale Du et al. 2014
@ref: 21330
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prolixibacteraceae
genus: Draconibacterium
species: Draconibacterium orientale
full scientific name: Draconibacterium orientale Du et al. 2014
strain designation: FH5
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 21330
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 21330
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.985 |
Isolation, sampling and environmental information
isolation
- @ref: 21330
- sample type: marine sediment
- geographic location: Shandong Province, coast of Weihai, (122° 03' 44.01'' E 37°32' 01.93'' N)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 37.5339
- longitude: 122.062
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_794.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_149;96_482;97_551;98_634;99_794&stattab=map
- Last taxonomy: Draconibacterium orientale
- 16S sequence: JQ683778
- Sequence Identity:
- Total samples: 1026
- soil counts: 83
- aquatic counts: 891
- animal counts: 30
- plant counts: 22
Safety information
risk assessment
- @ref: 21330
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21330
- description: Draconibacterium orientale strain FH5 16S ribosomal RNA gene, partial sequence
- accession: JQ683778
- length: 1486
- database: ena
- NCBI tax ID: 1168034
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Draconibacterium orientale DSM 25947 | GCA_900111425 | contig | ncbi | 1168034 |
| 66792 | Draconibacterium orientale Draconibacterium orientale type strain FH5T | GCA_000626635 | complete | ncbi | 1168034 |
| 66792 | Draconibacterium orientale strain DSM 25947 | 1168034.6 | wgs | patric | 1168034 |
| 66792 | Draconibacterium orientale DSM 25947 | 2693429902 | draft | img | 1168034 |
| 66792 | Draconibacterium orientale FH5 | 2576861037 | complete | img | 1168034 |
GC content
- @ref: 21330
- GC-content: 42.0
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 85.155 | no |
| flagellated | no | 97.689 | no |
| gram-positive | no | 96.171 | no |
| anaerobic | no | 54.193 | no |
| halophile | no | 74.535 | no |
| spore-forming | no | 92.575 | no |
| glucose-util | yes | 92.918 | no |
| aerobic | no | 73.205 | no |
| thermophile | no | 97.661 | yes |
| glucose-ferment | no | 65.255 | no |
External links
@ref: 21330
culture collection no.: DSM 25947, CICC 10585
straininfo link
- @ref: 88638
- straininfo: 407881
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24523447 | Draconibacterium orientale gen. nov., sp. nov., isolated from two distinct marine environments, and proposal of Draconibacteriaceae fam. nov. | Du ZJ, Wang Y, Dunlap C, Rooney AP, Chen GJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.056812-0 | 2014 | Animals, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sharks/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 25636945 | Draconibacterium filum sp. nov., a new species of the genus of Draconibacterium from sediment of the east coast of the Korean Peninsula. | Gwak JH, Kim SJ, Jung MY, Kim JG, Roh SW, Yim KJ, Lee YJ, Kim SG, Park SJ, Rhee SK | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0396-4 | 2015 | Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Geologic Sediments, Hydrogen-Ion Concentration, Korea, Microscopy, Molecular Sequence Data, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21330 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25947 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25947) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88638 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407881.1 |