Strain identifier
BacDive ID: 248
Type strain:
Species: Aeromonas enteropelogenes
Strain Designation: J11
Strain history: CIP <- 1995, JCM <- DSMZ <- R.H.W. Schubert <- M.D. Sanyal: strain J11, Aeromonas hydrophila
NCBI tax ID(s): 29489 (species)
General
@ref: 2470
BacDive-ID: 248
DSM-Number: 6394
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile
description: Aeromonas enteropelogenes J11 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 29489
- Matching level: species
strain history
@ref | history |
---|---|
2470 | <- R.H.W. Schubert <- M.D. Sanyal |
67770 | DSM 6394 <-- R. H. W. Schubert <-- M. D. Sanyal J11. |
119083 | CIP <- 1995, JCM <- DSMZ <- R.H.W. Schubert <- M.D. Sanyal: strain J11, Aeromonas hydrophila |
doi: 10.13145/bacdive248.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Aeromonadales
- family: Aeromonadaceae
- genus: Aeromonas
- species: Aeromonas enteropelogenes
- full scientific name: Aeromonas enteropelogenes Schubert et al. 1991
synonyms
- @ref: 20215
- synonym: Aeromonas trota
@ref: 2470
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Aeromonadales
family: Aeromonadaceae
genus: Aeromonas
species: Aeromonas enteropelogenes
full scientific name: Aeromonas enteropelogenes Schubert et al. 1991
strain designation: J11
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 97.884 | ||
69480 | 99.991 | negative | ||
119083 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2470 | REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) | yes | https://mediadive.dsmz.de/medium/220a | Name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
38501 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
119083 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2470 | positive | growth | 30 | mesophilic |
38501 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
119083 | positive | growth | 10-41 | |
119083 | no | growth | 5 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119083
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.978 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
119083 | NaCl | positive | growth | 0-6 % |
119083 | NaCl | no | growth | 8 % |
119083 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | - | fermentation | 30849 |
68368 | amygdalin | - | fermentation | 27613 |
68368 | melibiose | - | fermentation | 28053 |
68368 | sucrose | - | fermentation | 17992 |
68368 | L-rhamnose | - | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | + | hydrolysis | 5291 |
68368 | tryptophan | + | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | + | assimilation | 16947 |
68368 | ornithine | - | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | + | hydrolysis | 29016 |
119083 | citrate | + | carbon source | 16947 |
119083 | nitrate | + | reduction | 17632 |
119083 | nitrite | + | reduction | 16301 |
119083 | sodium thiosulfate | - | builds gas from | 132112 |
antibiotic resistance
- @ref: 119083
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
119083 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
119083 | oxidase | + | |
119083 | beta-galactosidase | + | 3.2.1.23 |
119083 | alcohol dehydrogenase | + | 1.1.1.1 |
119083 | amylase | + | |
119083 | DNase | + | |
119083 | catalase | + | 1.11.1.6 |
119083 | tween esterase | + | |
119083 | gamma-glutamyltransferase | + | 2.3.2.2 |
119083 | lecithinase | - | |
119083 | lysine decarboxylase | + | 4.1.1.18 |
119083 | ornithine decarboxylase | - | 4.1.1.17 |
119083 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119083 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2470 | + | + | + | - | + | - | - | - | + | - | + | + | + | - | - | - | - | - | - | - | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119083 | + | - | - | + | + | + | - | - | - | + | + | + | + | - | + | - | - | + | + | - | - | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | +/- | - | - | - | - | - | - | + | - | - | + | +/- | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119083 | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | - | + | + | + | + | + | - | + | + | - | - | - | - | - | - | + | - | + | - | - | + | - | + | - | - | - | - | + | + | - | - | + | + | + | + | - | - | + | + | + | - | - | + | + | + | + | - | - | - | - | - | - | + | + | - | - | + | - | - | + | + | - | - | + | + | - | + | - | - | - | + | - | + | + | + | + | + | + | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
2470 | human faeces | India | IND | Asia |
67770 | Human stool | India | IND | Asia |
119083 | Human, Stool | India | IND | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_19.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_19&stattab=map
- Last taxonomy: Aeromonas
- 16S sequence: EF465529
- Sequence Identity:
- Total samples: 1087
- soil counts: 45
- aquatic counts: 400
- animal counts: 595
- plant counts: 47
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2470 | 2 | Risk group (German classification) |
119083 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aeromonas enteropelogenes strain CECT 4487 16S ribosomal RNA gene, partial sequence | EF465529 | 1506 | ena | 29489 |
20218 | Aeromonas enteropelogenes strain CECT4487 isolate TTGE gel band 27 16S ribosomal RNA gene, partial sequence | JX453443 | 151 | ena | 29489 |
20218 | A.enteropelogenes 16S ribosomal RNA | X71121 | 1490 | ena | 29489 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aeromonas enteropelogenes strain CECT 4487 | 29489.4 | wgs | patric | 29489 |
66792 | Aeromonas enteropelogenes strain FDAARGOS_1509 | 29489.30 | complete | patric | 29489 |
66792 | Aeromonas enteropelogenes CECT 4487 | 2651869850 | draft | img | 29489 |
67770 | Aeromonas enteropelogenes CECT 4487 | GCA_000819845 | scaffold | ncbi | 29489 |
66792 | Aeromonas enteropelogenes strain FDAARGOS_1509 | 29489.44 | complete | patric | 29489 |
66792 | Aeromonas enteropelogenes strain FDAARGOS_1509 | 29489.34 | complete | patric | 29489 |
66792 | Aeromonas enteropelogenes strain FDAARGOS_1509 | 29489.38 | complete | patric | 29489 |
GC content
- @ref: 2470
- GC-content: 60.0-60.8
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 99.008 | no |
anaerobic | no | 96.744 | no |
halophile | no | 88.287 | no |
spore-forming | no | 96.433 | no |
glucose-util | yes | 88.769 | no |
motile | yes | 92.711 | no |
flagellated | yes | 92.229 | no |
aerobic | yes | 84.864 | no |
thermophile | no | 99.37 | no |
glucose-ferment | yes | 89.959 | no |
External links
@ref: 2470
culture collection no.: DSM 6394, ATCC 49803, JCM 8355, CECT 4487, CIP 104434, LMG 12646, NCIMB 13209
straininfo link
- @ref: 69930
- straininfo: 7857
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12508855 | DNA-DNA reassociation and phenotypic data indicate synonymy between Aeromonas enteropelogenes Schubert et al. 1990 and Aeromonas trota Carnahan et al. 1991. | Huys G, Denys R, Swings J | Int J Syst Evol Microbiol | 10.1099/00207713-52-6-1969 | 2002 | Aeromonas/*classification/*genetics/metabolism, DNA, Bacterial/*genetics, Nucleic Acid Hybridization, Phenotype, Phylogeny, Species Specificity, Terminology as Topic | Phenotype |
Enzymology | 20124004 | Genetic and biochemical characterization of TRU-1, the endogenous class C beta-lactamase from Aeromonas enteropelogenes. | De Luca F, Giraud-Morin C, Rossolini GM, Docquier JD, Fosse T | Antimicrob Agents Chemother | 10.1128/AAC.01252-09 | 2010 | Aeromonas/drug effects/*enzymology/*genetics/isolation & purification, Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA Primers/genetics, DNA, Bacterial/genetics, Drug Resistance, Bacterial/genetics, Escherichia coli/drug effects/genetics, Genes, Bacterial, Humans, Kinetics, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Transformation, Genetic, beta-Lactamases/classification/*genetics/metabolism | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2470 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6394) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6394 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38501 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16342 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69930 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7857.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119083 | Curators of the CIP | Collection of Institut Pasteur (CIP 104434) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104434 |