Strain identifier
BacDive ID: 24799
Type strain:
Species: Proteinivorax tanatarense
Strain Designation: Z-910
Strain history: <- V. Kevbrin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-910 <- V. V. Kevbrin {2010}
NCBI tax ID(s): 1260629 (species)
General
@ref: 21272
BacDive-ID: 24799
DSM-Number: 25977
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Proteinivorax tanatarense Z-910 is an anaerobe, mesophilic bacterium that was isolated from decaying algal bloom from an alkaline lake.
NCBI tax id
- NCBI tax id: 1260629
- Matching level: species
strain history
- @ref: 21272
- history: <- V. Kevbrin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-910 <- V. V. Kevbrin {2010}
doi: 10.13145/bacdive24799.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Proteinivoracaceae
- genus: Proteinivorax
- species: Proteinivorax tanatarense
- full scientific name: Proteinivorax tanatarense Kevbrin et al. 2014
@ref: 21272
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Proteinivoraceae
genus: Proteinivorax
species: Proteinivorax tanatarense
full scientific name: Proteinivorax tanatarense Kevbrin et al. 2014
strain designation: Z-910
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21272
- name: PROTEINIVORAX MEDIUM (DSMZ Medium 1505)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1505
- composition: Name: PROTEINIVORAX MEDIUM (DSMZ Medium 1505) Composition: Na2CO3 60.0 g/l NaHCO3 50.0 g/l NaCl 20.0 g/l Tryptone 3.0 g/l Na-thioglycolate 1.0 g/l KH2PO4 0.3 g/l MgSO4 x 7 H2O 0.12 g/l CaCl2 x 2 H2O 0.03 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 21272
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 21272
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 21272
- sample type: decaying algal bloom from an alkaline lake
- geographic location: Altai region, lake Tanatar VI (51°37'29.75''N and 79°48'28.37''E)
- country: Russia
- origin.country: RUS
- continent: Asia
- latitude: 51.6249
- longitude: 79.8079
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Host | #Algae | |
#Host | #Plants | #Decomposing plant |
#Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_151250.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3665;96_57383;97_74221;98_99928;99_151250&stattab=map
- Last taxonomy: Proteinivorax
- 16S sequence: JQ904542
- Sequence Identity:
- Total samples: 186
- soil counts: 23
- aquatic counts: 123
- animal counts: 37
- plant counts: 3
Safety information
risk assessment
- @ref: 21272
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
21272 | Proteinivorax tanatarense strain Z-910 16S ribosomal RNA gene, partial sequence | JQ904541 | 1488 | ena | 1260629 |
21272 | Proteinivorax tanatarense strain Z-910 from Russia 16S ribosomal RNA gene, partial sequence | JQ904542 | 1488 | ena | 1260629 |
GC content
- @ref: 21272
- GC-content: 32.2
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 21272
culture collection no.: DSM 25977, VKM B-2763
straininfo link
- @ref: 88621
- straininfo: 406816
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23807772 | Proteinivorax tanatarense gen. nov., sp. nov., an anaerobic, haloalkaliphilic, proteolytic bacterium isolated from a decaying algal bloom, and proposal of Proteinivoraceae fam. nov. | Kevbrin V, Boltyanskaya Y, Zhilina T, Kolganova T, Lavrentjeva E, Kuznetsov B | Extremophiles | 10.1007/s00792-013-0557-1 | 2013 | Bacteria, Anaerobic/classification/genetics/*isolation & purification/metabolism, Cellobiose/metabolism, DNA, Bacterial/chemistry, *Eutrophication, Fermentation, Fumarates/metabolism, Glycerol/metabolism, Gram-Positive Bacteria/classification/genetics/*isolation & purification/metabolism, Lakes/microbiology, Phylogeny, Pyruvic Acid/metabolism, RNA, Ribosomal, 16S/genetics, Ribonucleosides/metabolism, Salt Tolerance, Sulfur/metabolism | Metabolism |
Phylogeny | 28975474 | Proteinivorax hydrogeniformans sp. nov., an anaerobic, haloalkaliphilic bacterium fermenting proteinaceous compounds with high hydrogen production. | Boltyanskaya Y, Detkova E, Pimenov N, Kevbrin V | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0949-9 | 2017 | Bacteria, Anaerobic/*metabolism, Clostridiales/chemistry/classification/*metabolism/physiology, *Fermentation, Hydrogen/*metabolism, Metabolomics/methods, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Metabolism |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21272 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25977 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25977) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88621 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406816.1 |