Strain identifier
BacDive ID: 24793
Type strain: 
Species: Solimonas terrae
Strain Designation: KIS83-12
Strain history: <- S.-W. Kwon, KACC; KIS83-12 <- H.-Y. Weon
NCBI tax ID(s): 1396819 (species)
version 8.1 (current version)
General
@ref: 21180
BacDive-ID: 24793
DSM-Number: 27281
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Solimonas terrae KIS83-12 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1396819
- Matching level: species
strain history
- @ref: 21180
- history: <- S.-W. Kwon, KACC; KIS83-12 <- H.-Y. Weon
doi: 10.13145/bacdive24793.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Nevskiales
- family: Nevskiaceae
- genus: Solimonas
- species: Solimonas terrae
- full scientific name: Solimonas terrae Kim et al. 2014
@ref: 21180
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Nevskiaceae
genus: Solimonas
species: Solimonas terrae
full scientific name: Solimonas terrae Kim et al. 2014
strain designation: KIS83-12
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21180
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 21180
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21180
- sample type: soil
- geographic location: Taean region, Gaui island
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_55569.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_146;96_1648;97_1972;98_39690;99_55569&stattab=map
- Last taxonomy: Solimonas terrae subclade
- 16S sequence: KF112046
- Sequence Identity:
- Total samples: 846
- soil counts: 352
- aquatic counts: 127
- animal counts: 137
- plant counts: 230
Safety information
risk assessment
- @ref: 21180
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21180
- description: Solimonas sp. KIS83-12 16S ribosomal RNA gene, partial sequence
- accession: KF112046
- length: 1433
- database: ena
- NCBI tax ID: 1396819
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Solimonas terrae KIS83-12 | GCA_011067135 | contig | ncbi | 1396819 |
| 66792 | Solimonas terrae KIS83-12 | 2890694948 | draft | img | 1396819 |
GC content
- @ref: 21180
- GC-content: 67.9
- method: fluorimetric
External links
@ref: 21180
culture collection no.: DSM 27281, KACC 16967
straininfo link
- @ref: 88615
- straininfo: 406697
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24421276 | Solimonas terrae sp. nov., isolated from soil. | Kim SJ, Moon JY, Weon HY, Ahn JH, Chen WM, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.055574-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Genetics |
| Phylogeny | 30016233 | Solimonas fluminis sp. nov., isolated from a freshwater river. | Lee Y, Lee B, Lee K, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002865 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 33253084 | Solimonas marina sp. nov., isolated from deep seawater of the Pacific Ocean. | Liu X, Lai Q, Sun F, Du Y, Gai Y, Li G, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004528 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21180 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27281 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27281) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88615 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406697.1 |