Strain identifier
BacDive ID: 24779
Type strain: 
Species: Geoglobus ahangari
Strain Designation: 234
Strain history: <- K. Kashefi, Dept. Microbiology, Michigan State Univ., USA; 234
NCBI tax ID(s): 113653 (species)
version 8.1 (current version)
General
@ref: 21082
BacDive-ID: 24779
DSM-Number: 27542
keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Geoglobus ahangari 234 is an anaerobe, hyperthermophilic archaeon that was isolated from hydrothermal vent, 2000 m depth.
NCBI tax id
- NCBI tax id: 113653
- Matching level: species
strain history
- @ref: 21082
- history: <- K. Kashefi, Dept. Microbiology, Michigan State Univ., USA; 234
doi: 10.13145/bacdive24779.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Archaeoglobi
- order: Archaeoglobales
- family: Archaeoglobaceae
- genus: Geoglobus
- species: Geoglobus ahangari
- full scientific name: Geoglobus ahangari Kashefi et al. 2002
@ref: 21082
domain: Archaea
phylum: Euryarchaeota
class: Archaeoglobi
order: Archaeoglobi, not assigned to order
family: Archaeoglobaceae
genus: Geoglobus
species: Geoglobus ahangari
full scientific name: Geoglobus ahangari Kashefi et al. 2002
strain designation: 234
type strain: yes
Morphology
multimedia
- @ref: 21082
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27542.jpg
- caption: Medium 1529, 85°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21082
- name: GEOGLOBUS AHANGARI MEDIUM (DSMZ Medium 1529)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1529
- composition: Name: GEOGLOBUS AHANGARI MEDIUM (DSMZ Medium 1529) Composition: NaCl 18.9621 g/l Fe(III) citrate 11.1776 g/l MgCl2 x 6 H2O 8.98204 g/l NaHCO3 2.49501 g/l Na-pyruvate 0.998004 g/l KH2PO4 0.598802 g/l CaCl2 x 2 H2O 0.299401 g/l FeCl2 x 4 H2O 0.199601 g/l MgSO4 x 7 H2O 0.149701 g/l KCl 0.0998004 g/l Yeast extract 0.0998004 g/l (NH4)2SO4 0.0998004 g/l L-Cysteine HCl x H2O 0.0998004 g/l NaBr 0.0499002 g/l SrCl2 0.0199601 g/l HCl 0.00249501 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 21082
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 21082
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 21082
- sample type: hydrothermal vent, 2000 m depth
- geographic location: Guaymas Basin
- country: Mexico
- origin.country: MEX
- continent: North America
- latitude: 27
- longitude: -111
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 21082
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21082
- description: Geoglobus ahangari strain 234 16S ribosomal RNA, partial sequence
- accession: NR_041788
- length: 1435
- database: nuccore
- NCBI tax ID: 113653
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Geoglobus ahangari 234 | GCA_001006045 | complete | ncbi | 113653 |
| 66792 | Geoglobus ahangari 234 | 2808606696 | complete | img | 113653 |
GC content
- @ref: 21082
- GC-content: 58.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 88.653 | no |
| flagellated | no | 97.265 | no |
| gram-positive | no | 97.34 | no |
| anaerobic | yes | 97.215 | yes |
| aerobic | no | 95.626 | no |
| halophile | no | 70.886 | no |
| spore-forming | no | 95.407 | no |
| thermophile | yes | 99.999 | yes |
| glucose-util | yes | 73.296 | no |
| glucose-ferment | no | 76.517 | no |
External links
@ref: 21082
culture collection no.: DSM 27542, ATCC BAA 425
straininfo link
- @ref: 88604
- straininfo: 401422
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21082 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27542 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27542) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 88604 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401422.1 |