Strain identifier
BacDive ID: 24769
Type strain:
Species: Blautia faecis
Strain Designation: M25
Strain history: <- Jin-Woo Bae, Kyung Hee Univ.
NCBI tax ID(s): 871665 (species)
General
@ref: 21179
BacDive-ID: 24769
DSM-Number: 27629
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, ovoid-shaped
description: Blautia faecis M25 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human faeces, healthy Korean male.
NCBI tax id
- NCBI tax id: 871665
- Matching level: species
strain history
@ref | history |
---|---|
21179 | <- KCTC; KCTC 5980 |
67770 | J.-W. Bae M25. |
67771 | <- Jin-Woo Bae, Kyung Hee Univ. |
doi: 10.13145/bacdive24769.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Blautia
- species: Blautia faecis
- full scientific name: Blautia faecis Park et al. 2013
@ref: 21179
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Lachnospiraceae
genus: Blautia
species: Blautia faecis
full scientific name: Blautia faecis Park et al. 2013
strain designation: M25
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
30457 | positive | 1.65 µm | 0.65 µm | ovoid-shaped | no |
67771 | no | ||||
67771 | positive |
pigmentation
- @ref: 30457
- production: yes
Culture and growth conditions
culture medium
- @ref: 21179
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
21179 | positive | growth | 37 | mesophilic |
30457 | positive | optimum | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
culture pH
- @ref: 30457
- ability: positive
- type: optimum
- pH: 6.2
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30457 | anaerobe |
67771 | anaerobe |
spore formation
@ref | spore formation |
---|---|
30457 | no |
67771 | no |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30457 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
30457 | 22599 | arabinose | + | carbon source |
30457 | 33942 | ribose | + | carbon source |
30457 | 4853 | esculin | + | hydrolysis |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
30457 | acid phosphatase | + | 3.1.3.2 |
30457 | alpha-galactosidase | + | 3.2.1.22 |
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | beta-glucosidase | + | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | + | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21179 | - | - | + | + | - | + | + | +/- | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
21179 | human faeces, healthy Korean male | Republic of Korea | KOR | Asia |
67770 | Human feces | |||
67771 | From human faces, healthy Korean male(28 years old) | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_8701.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_4053;97_4974;98_6355;99_8701&stattab=map
- Last taxonomy: Blautia
- 16S sequence: NR_109014
- Sequence Identity:
- Total samples: 5086
- aquatic counts: 40
- animal counts: 5046
Safety information
risk assessment
- @ref: 21179
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
21179 | Blautia faecis strain M25 16S ribosomal RNA gene, partial sequence | HM626178 | 1262 | ena | 871665 |
67771 | Blautia faecis strain M25 16S ribosomal RNA, partial sequence | NR_109014 | 1262 | nuccore | 871665 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Blautia faecis strain DSM 27629 | 871665.33 | wgs | patric | 871665 |
66792 | Blautia faecis DSM 27629 | 2901179768 | draft | img | 871665 |
GC content
@ref | GC-content | method |
---|---|---|
21179 | 41.6 | |
67771 | 41.6 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 90.417 | yes |
flagellated | no | 92.91 | no |
gram-positive | yes | 92.873 | yes |
anaerobic | yes | 99.365 | no |
halophile | no | 84.548 | no |
spore-forming | no | 52.011 | no |
thermophile | no | 98.289 | yes |
glucose-util | yes | 89.266 | no |
aerobic | no | 97.777 | no |
glucose-ferment | yes | 79.343 | no |
External links
@ref: 21179
culture collection no.: DSM 27629, JCM 17205, KCTC 5980
straininfo link
- @ref: 88595
- straininfo: 400950
literature
- topic: Phylogeny
- Pubmed-ID: 22544782
- title: Blautia faecis sp. nov., isolated from human faeces.
- authors: Park SK, Kim MS, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036541-0
- year: 2012
- mesh: Adult, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Feces/*microbiology, Fermentation, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Humans, Male, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21179 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27629 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27629) | |||
30457 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26792 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68380 | Automatically annotated from API rID32A | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
88595 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400950.1 |