Strain identifier
BacDive ID: 2476
Type strain: 
Species: Thiocapsa pendens
Strain Designation: 1314
Strain history: <- N. Pfennig, 1314
NCBI tax ID(s): 12934 (species)
version 9 (current version)
General
@ref: 61
BacDive-ID: 2476
DSM-Number: 236
keywords: 16S sequence, Bacteria, anaerobe
description: Thiocapsa pendens 1314 is an anaerobe bacterium that was isolated from sewage pond.
NCBI tax id
- NCBI tax id: 12934
- Matching level: species
strain history
- @ref: 61
- history: <- N. Pfennig, 1314
doi: 10.13145/bacdive2476.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Thiocapsa
- species: Thiocapsa pendens
- full scientific name: Thiocapsa pendens (Molisch 1906) Guyoneaud et al. 1998
synonyms
@ref synonym 20215 Rhodothece pendens 20215 Amoebobacter pendens
@ref: 61
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Thiocapsa
species: Thiocapsa pendens
full scientific name: Thiocapsa pendens (Molisch 1906) Guyoneaud et al. 1998
strain designation: 1314
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 61
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 61
- sample type: sewage pond
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Wastewater |
| #Environmental | #Aquatic | #Pond (small) |
taxonmaps
- @ref: 69479
- File name: preview.99_183437.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_3627;97_4456;98_5717;99_183437&stattab=map
- Last taxonomy: Thiocapsa pendens
- 16S sequence: AJ002797
- Sequence Identity:
- Total samples: 6
- aquatic counts: 3
- animal counts: 3
Safety information
risk assessment
- @ref: 61
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thiocapsa pendens partial 16S rRNA gene, type strain DSM 236
- accession: AJ002797
- length: 1452
- database: nuccore
- NCBI tax ID: 12934
GC content
- @ref: 61
- GC-content: 65.3
External links
@ref: 61
culture collection no.: DSM 236
straininfo link
- @ref: 72018
- straininfo: 47104
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 61 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 236) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-236 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72018 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47104.1 | StrainInfo: A central database for resolving microbial strain identifiers |