Strain identifier
BacDive ID: 24757
Type strain: 
Species: Teredinibacter turnerae
Strain Designation: T7902
Strain history: <- J. B. Waterbury; T7902. Accodring to the depositor this deposit does not resemble the original strain, but 16S rRNA gene sequencing confirms that this is a strain of Teredinibacter turnerae and the DSM number is used in the publication
NCBI tax ID(s): 2426 (species)
version 8.1 (current version)
General
@ref: 20855
BacDive-ID: 24757
DSM-Number: 15152
keywords: genome sequence, 16S sequence, Bacteria, aerobe, chemoheterotroph, mesophilic, Gram-negative, motile, rod-shaped
description: Teredinibacter turnerae T7902 is an aerobe, chemoheterotroph, mesophilic bacterium that was isolated from Lyrodus pedicellatus . Laboratory culture, original specimens from Long Beach, CA.
NCBI tax id
- NCBI tax id: 2426
- Matching level: species
strain history
- @ref: 20855
- history: <- J. B. Waterbury; T7902. Accodring to the depositor this deposit does not resemble the original strain, but 16S rRNA gene sequencing confirms that this is a strain of Teredinibacter turnerae and the DSM number is used in the publication
doi: 10.13145/bacdive24757.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Cellvibrionaceae
- genus: Teredinibacter
- species: Teredinibacter turnerae
- full scientific name: Teredinibacter turnerae Distel et al. 2002
@ref: 20855
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Cellvibrionaceae, not assigned to order
family: Cellvibrionaceae
genus: Teredinibacter
species: Teredinibacter turnerae
full scientific name: Teredinibacter turnerae Distel et al. 2002
strain designation: T7902
type strain: yes
Morphology
cell morphology
- @ref: 43378
- gram stain: negative
- cell length: 3-6 µm
- cell width: 0.4-0.6 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: polar
colony morphology
- @ref: 43378
- colony color: translucent, yellow-brown colour with age
- medium used: SBM agar
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20855 | TEREDINIBACTER TURNERAE MEDIUM (DSMZ Medium 967) | yes | https://mediadive.dsmz.de/medium/967 | Name: TEREDINIBACTER TURNERAE MEDIUM (DSMZ Medium 967) Composition: HEPES 5.2 g/l Agar 2.0 g/l KH2PO4 0.0153 g/l Na2CO3 0.01 g/l Ferric ammonium citrate 0.003 g/l H3BO3 0.00286 g/l MnCl2 x 4 H2O 0.00181 g/l Na2-EDTA 0.0005 g/l Na2MoO4 x 2 H2O 0.00039 g/l ZnSO4 x 7 H2O 0.00022 g/l CuSO4 x 5 H2O 7.9e-05 g/l Sea water Distilled water |
| 43378 | SBM agar | yes | ||
| 43378 | SBM agar medium | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20855 | positive | growth | 28 | mesophilic |
| 43378 | no | growth | 40 | thermophilic |
| 43378 | no | growth | 15 | psychrophilic |
| 43378 | positive | optimum | 30-35 | mesophilic |
| 43378 | positive | growth | 20-30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 43378 | positive | growth | 6-10.5 | alkaliphile |
| 43378 | positive | optimum | 8.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 43378
- oxygen tolerance: aerobe
nutrition type
- @ref: 43378
- type: chemoheterotroph
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 43378 | NaCl | positive | growth | 0.1-0.6 M |
| 43378 | NaCl | positive | optimum | 0.3 M |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43378 | 30089 | acetate | + | growth |
| 43378 | 85146 | carboxymethylcellulose | + | growth |
| 43378 | 17057 | cellobiose | + | growth |
| 43378 | 17057 | cellobiose | + | builds acid from |
| 43378 | 62968 | cellulose | + | growth |
| 43378 | 62968 | cellulose | + | builds acid from |
| 43378 | 28757 | fructose | + | growth |
| 43378 | 28757 | fructose | + | builds acid from |
| 43378 | 17234 | glucose | + | growth |
| 43378 | 17234 | glucose | + | builds acid from |
| 43378 | 29985 | L-glutamate | + | growth |
| 43378 | 17309 | pectin | + | growth |
| 43378 | 17309 | pectin | + | builds acid from |
| 43378 | 15361 | pyruvate | + | growth |
| 43378 | 17814 | salicin | + | growth |
| 43378 | 17814 | salicin | + | builds acid from |
| 43378 | 30031 | succinate | + | growth |
| 43378 | 17992 | sucrose | + | growth |
| 43378 | 17992 | sucrose | + | builds acid from |
| 43378 | 37166 | xylan | + | growth |
| 43378 | 18222 | xylose | + | growth |
| 43378 | 18222 | xylose | + | builds acid from |
| 43378 | yeast extract | + | growth |
Isolation, sampling and environmental information
isolation
- @ref: 20855
- sample type: Lyrodus pedicellatus (gill symbiont). Laboratory culture, original specimens from Long Beach, CA
- host species: Lyrodus pedicellatus
- geographic location: CA, Long Beach
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Host | #Other | #Extracellular |
| #Host | #Invertebrates (Other) | #Mollusca |
Safety information
risk assessment
- @ref: 20855
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20855
- description: Teredinibacter turnerae 16S small subunit ribosomal RNA gene, partial sequence
- accession: AY028398
- length: 1469
- database: ena
- NCBI tax ID: 2426
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Teredinibacter turnerae T7902 | GCA_000379165 | scaffold | ncbi | 1056820 |
| 66792 | Teredinibacter turnerae T7902 | 1056820.3 | wgs | patric | 1056820 |
| 66792 | Teredinibacter turnerae T7902 | 2513237099 | draft | img | 1056820 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 20855 | 49-51 | |
| 43378 | 49-51 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.287 | yes |
| flagellated | yes | 91.232 | yes |
| gram-positive | no | 99.071 | yes |
| anaerobic | no | 98.874 | yes |
| aerobic | yes | 85.819 | no |
| halophile | no | 51.624 | no |
| spore-forming | no | 94.015 | no |
| thermophile | no | 99.246 | no |
| glucose-util | yes | 91.955 | no |
| glucose-ferment | no | 79.571 | no |
External links
@ref: 20855
culture collection no.: DSM 15152, ATCC 39867
straininfo link
- @ref: 88584
- straininfo: 41577
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12508896 | Teredinibacter turnerae gen. nov., sp. nov., a dinitrogen-fixing, cellulolytic, endosymbiotic gamma-proteobacterium isolated from the gills of wood-boring molluscs (Bivalvia: Teredinidae). | Distel DL, Morrill W, MacLaren-Toussaint N, Franks D, Waterbury J | Int J Syst Evol Microbiol | 10.1099/00207713-52-6-2261 | 2002 | Animals, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Genes, Bacterial, Gills/microbiology, Microscopy, Electron, Molecular Sequence Data, Mollusca/microbiology, Nitrogen Fixation, Phenotype, Phylogeny, Pseudomonadaceae/*classification/genetics/isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Symbiosis | Genetics |
| Phylogeny | 16014479 | Saccharophagus degradans gen. nov., sp. nov., a versatile marine degrader of complex polysaccharides. | Ekborg NA, Gonzalez JM, Howard MB, Taylor LE, Hutcheson SW, Weiner RM | Int J Syst Evol Microbiol | 10.1099/ijs.0.63627-0 | 2005 | Alteromonadaceae/*classification/genetics/metabolism/physiology, Bacterial Typing Techniques, Biodegradation, Environmental, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Polysaccharides/metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Metabolism |
| Metabolism | 17933945 | CelAB, a multifunctional cellulase encoded by Teredinibacter turnerae T7902T, a culturable symbiont isolated from the wood-boring marine bivalve Lyrodus pedicellatus. | Ekborg NA, Morrill W, Burgoyne AM, Li L, Distel DL | Appl Environ Microbiol | 10.1128/AEM.00876-07 | 2007 | Amino Acid Sequence, Animals, Bacterial Proteins/genetics/isolation & purification/*metabolism, Binding Sites/genetics, Bivalvia/*microbiology, Cellulase/genetics/isolation & purification/*metabolism, Cellulose/metabolism, Chitin/metabolism, Gammaproteobacteria/*enzymology/genetics/growth & development, Polysaccharides/metabolism, Protein Binding | Enzymology |
| Enzymology | 20393708 | A novel salt-tolerant endo-beta-1,4-glucanase Cel5A in Vibrio sp. G21 isolated from mangrove soil. | Gao Z, Ruan L, Chen X, Zhang Y, Xu X | Appl Microbiol Biotechnol | 10.1007/s00253-010-2554-y | 2010 | Amino Acid Sequence, Avicennia/*microbiology, Bacterial Proteins/*chemistry/genetics/metabolism, Cellulase/*chemistry/genetics/metabolism, Cloning, Molecular, Enzyme Stability, Molecular Sequence Data, Plant Roots/microbiology, Sequence Homology, Amino Acid, Sodium Chloride/*pharmacology, Soil Microbiology, Substrate Specificity, Vibrio/chemistry/*enzymology/genetics/isolation & purification | Metabolism |
| Phylogeny | 20833889 | Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera. | Chen MH, Sheu SY, Arun AB, Young CC, Chen CA, Wang JT, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.024190-0 | 2010 | Animals, Anthozoa/*microbiology, DNA, Bacterial, DNA, Ribosomal/genetics, Fatty Acids/genetics/metabolism, Gammaproteobacteria, Gram-Negative Bacteria/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolism | Metabolism |
| Phylogeny | 22133150 | Maricurvus nonylphenolicus gen. nov., sp. nov., a nonylphenol-degrading bacterium isolated from seawater. | Iwaki H, Takada K, Hasegawa Y | FEMS Microbiol Lett | 10.1111/j.1574-6968.2011.02471.x | 2011 | Base Composition, Biodegradation, Environmental, Gammaproteobacteria/classification/genetics/*isolation & purification/*metabolism, Molecular Sequence Data, Phenols/*metabolism, Phylogeny, Seawater/*microbiology, Water Pollutants, Chemical/*metabolism | Metabolism |
| Phylogeny | 23291764 | Identification and characterization of cellobiose 2-epimerases from various aerobes. | Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H | Biosci Biotechnol Biochem | 10.1271/bbb.120742 | 2013 | Aerobiosis, Bacteria, Aerobic/chemistry/*enzymology, Bacterial Proteins/classification/*isolation & purification/*metabolism, Carbohydrate Epimerases/classification/*isolation & purification/*metabolism, Cellobiose/*metabolism, Enzyme Assays, Enzyme Stability, Escherichia coli/genetics, Glucose/metabolism, Hydrogen-Ion Concentration, Isoenzymes/classification/isolation & purification/metabolism, Kinetics, Lactose/metabolism, Mannose/metabolism, Phylogeny, Recombinant Proteins/classification/isolation & purification/metabolism, Species Specificity, Stereoisomerism, Substrate Specificity, Temperature | Enzymology |
| Phylogeny | 28875922 | Marinibactrum halimedae gen. nov., sp. nov., a gammaproteobacterium isolated from a marine macroalga. | Nishijima M, Adachi K, Sano H, Yamasato K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000502 | 2015 | ||
| Phylogeny | 28879838 | Agarilytica rhodophyticola gen. nov., sp. nov., isolated from Gracilaria blodgettii. | Ling SK, Xia J, Liu Y, Chen GJ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002193 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Gracilaria/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 31793854 | Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae. | Lucena T, Arahal DR, Sanz-Saez I, Acinas SG, Sanchez O, Aznar R, Pedros-Alio C, Pujalte MJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003906 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Mediterranean Sea, Phospholipids/chemistry, Phyllobacteriaceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20855 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15152 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15152) | |||
| 43378 | Daniel L. Distel, Wendy Morrill, Noelle MacLaren-Toussaint, Dianna Franks, John Waterbury | Teredinibacter turnerae gen. nov., sp. nov., a dinitrogen-fixing, cellulolytic, endosymbiotic gamma-proteobacterium isolated from the gills of wood-boring molluscs (Bivalvia: Teredinidae) | 10.1099/00207713-52-6-2261 | IJSEM 52: 2261-2269 2002 | 12508896 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 88584 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41577.1 |