Strain identifier
BacDive ID: 2475
Type strain: 
Species: Thiorhodovibrio winogradskyi
Strain Designation: SSP1
Strain history: <- J. Overmann, SSP1
NCBI tax ID(s): 77007 (species)
version 8.1 (current version)
General
@ref: 2779
BacDive-ID: 2475
DSM-Number: 6702
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Thiorhodovibrio winogradskyi SSP1 is an anaerobe, mesophilic bacterium of the family Chromatiaceae.
NCBI tax id
- NCBI tax id: 77007
- Matching level: species
strain history
- @ref: 2779
- history: <- J. Overmann, SSP1
doi: 10.13145/bacdive2475.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Thiorhodovibrio
- species: Thiorhodovibrio winogradskyi
- full scientific name: Thiorhodovibrio winogradskyi Overmann et al. 1993
@ref: 2779
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Thiorhodovibrio
species: Thiorhodovibrio winogradskyi
full scientific name: Thiorhodovibrio winogradskyi Overmann et al. 1993
strain designation: SSP1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2779
- name: PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)
- growth: yes
- link: https://mediadive.dsmz.de/medium/28
- composition: Name: PFENNIG'S MEDIUM I (DSMZ Medium 28; with strain-specific modifications) Composition: NaCl 20.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Ammonium chloride 0.349999 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 2779
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2779
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2779
- geographic location: British Columbia, Mahoney Lake
- country: Canada
- origin.country: CAN
- continent: North America
taxonmaps
- @ref: 69479
- File name: preview.99_31846.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_1753;97_2097;98_23639;99_31846&stattab=map
- Last taxonomy: Thiorhodovibrio winogradskyi subclade
- 16S sequence: Y12368
- Sequence Identity:
- Total samples: 10
- soil counts: 1
- aquatic counts: 9
Safety information
risk assessment
- @ref: 2779
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Thiorhodovibrio winogradskyi gene for 16S rRNA, partial sequence, strain: MBIC2776 | AB016986 | 1456 | ena | 77007 |
| 20218 | Thiorhodovibrio winogradskyi 16S rDNA gene, strain SSP1 | AJ006214 | 1382 | ena | 77007 |
| 20218 | Thiorhodovibrio winogradskyi partial 16S rRNA gene, type strain DSM 6702T | Y12368 | 1453 | ena | 77007 |
External links
@ref: 2779
culture collection no.: DSM 6702
straininfo link
- @ref: 72017
- straininfo: 48272
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2779 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6702) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6702 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 72017 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48272.1 | StrainInfo: A central database for resolving microbial strain identifiers |