Strain identifier
BacDive ID: 24742
Type strain: 
Species: Sediminibacterium magnilacihabitans
Strain Designation: MU-2
Strain history: <- DSM <- RA Albert, Marquette Univ., WI, USA, MU-2
NCBI tax ID(s): 669455 (species)
version 9.1 (current version)
General
@ref: 21306
BacDive-ID: 24742
DSM-Number: 22423
keywords: genome sequence, 16S sequence, Bacteria, aerobe, rod-shaped
description: Sediminibacterium magnilacihabitans MU-2 is an aerobe, rod-shaped bacterium that was isolated from lake water from a community water system.
NCBI tax id
- NCBI tax id: 669455
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21306 | <- R. A. Albert, Marquette Univ., WI, USA; MU-2 |
| 67771 | <- DSM <- RA Albert, Marquette Univ., WI, USA, MU-2 |
doi: 10.13145/bacdive24742.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Sediminibacterium
- species: Sediminibacterium magnilacihabitans
- full scientific name: Sediminibacterium magnilacihabitans (Albert et al. 2014) García-López et al. 2020
synonyms
- @ref: 20215
- synonym: Vibrionimonas magnilacihabitans
@ref: 21306
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Sediminibacterium
species: Sediminibacterium magnilacihabitans
full scientific name: Sediminibacterium magnilacihabitans (Albert et al. 2014) García-López et al. 2020
strain designation: MU-2
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | motility | confidence |
|---|---|---|---|---|
| 67771 | rod-shaped | |||
| 67771 | curved-shaped | |||
| 67771 | negative | |||
| 69480 | no | 91.25 | ||
| 69480 | negative | 92.744 |
Culture and growth conditions
culture medium
- @ref: 21306
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 21306 | positive | growth | 28 |
| 67771 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21306 | lake water from a community water system | Wisconsin, Lake Michigan, Port Washington | USA | USA | North America |
| 67771 | From Lake Michigan water | Lake Michigan, Port Washington, south-eastern Wisconsin | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Lake (large)
taxonmaps
- @ref: 69479
- File name: preview.99_44433.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_1179;97_1383;98_32245;99_44433&stattab=map
- Last taxonomy: Sediminibacterium magnilacihabitans
- 16S sequence: FJ816610
- Sequence Identity:
- Total samples: 14083
- soil counts: 2579
- aquatic counts: 2659
- animal counts: 7557
- plant counts: 1288
Safety information
risk assessment
- @ref: 21306
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21306
- description: Sediminibacterium magnilacihabitans strain MU-2 from USA 16S ribosomal RNA gene, partial sequence
- accession: FJ816610
- length: 1409
- database: nuccore
- NCBI tax ID: 669455
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sediminibacterium magnilacihabitans DSM 22423 | GCA_002973575 | contig | ncbi | 669455 |
| 66792 | Vibrionimonas magnilacihabitans strain DSM 22423 | 669455.3 | wgs | patric | 669455 |
| 66792 | Vibrionimonas magnilacihabitans DSM 22423 | 2728369469 | draft | img | 669455 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 21306 | 45.2 | high performance liquid chromatography (HPLC) |
| 67771 | 45.2 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 92.744 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.245 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.622 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.13 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.055 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.25 | no |
External links
@ref: 21306
culture collection no.: DSM 22423, KCTC 42570, NRRL B-59231, KCTC 22720
straininfo link
- @ref: 88570
- straininfo: 404922
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24170777 | Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water. | Albert RA, Zitomer D, Dollhopf M, Schauer-Gimenez AE, Struble C, King M, Son S, Langer S, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.056663-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, Lakes/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry, Wisconsin | Genetics |
| Phylogeny | 27412118 | Filimonas aurantiibacter sp. nov., an orange-pigmented bacterium isolated from lake water and emended description of the genus Filimonas. | Albert RA, Waas NE, Pavlons SC, Pearson JL, Roecker J, Tewalt N, Cleeve N, Rossello-Mora R, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001305 | 2016 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Michigan, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21306 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22423 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22423) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88570 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404922.1 |