Strain identifier

BacDive ID: 24733

Type strain: Yes

Species: Aquihabitans daechungensis

Strain Designation: CH22-21

Strain history: <- H Hangsak, KRIBB

NCBI tax ID(s): 1052257 (species)

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General

@ref: 21261

BacDive-ID: 24733

DSM-Number: 27986

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Aquihabitans daechungensis CH22-21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from reservoir freshwater.

NCBI tax id

  • NCBI tax id: 1052257
  • Matching level: species

strain history

@refhistory
21261<- JCM <- H. Huy, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; CH22-21
67770H. Huy CH22-21.
67771<- H Hangsak, KRIBB

doi: 10.13145/bacdive24733.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Acidimicrobiia
  • order: Acidimicrobiales
  • family: Iamiaceae
  • genus: Aquihabitans
  • species: Aquihabitans daechungensis
  • full scientific name: Aquihabitans daechungensis Jin et al. 2013

@ref: 21261

domain: Bacteria

phylum: Actinobacteria

class: Acidimicrobiia

order: Acidimicrobiales

family: Iamiaceae

genus: Aquihabitans

species: Aquihabitans daechungensis

full scientific name: Aquihabitans daechungensis Jin et al. 2013

strain designation: CH22-21

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30858positive0.85 µm0.4 µmrod-shapedno
67771positive

colony morphology

  • @ref: 21261
  • incubation period: >14 days

pigmentation

  • @ref: 30858
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21261
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21261positivegrowth28mesophilic
30858positivegrowth15-37
30858positiveoptimum30mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
30858positivegrowth7
30858positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

@refobservation
30858aggregates in clumps
67770quinones: MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3085830089acetate+carbon source
3085817306maltose+carbon source
3085833942ribose+carbon source
308589300suberic acid+carbon source
3085831011valerate+carbon source
308584853esculin+hydrolysis
3085817632nitrate+reduction

enzymes

@refvalueactivityec
30858acid phosphatase+3.1.3.2
30858alkaline phosphatase+3.1.3.1
30858catalase+1.11.1.6
30858gelatinase+
30858cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21261reservoir freshwaterDaechungRepublic of KoreaKORAsia
67770Freshwater from Daechung ReservoirRepublic of KoreaKORAsia
67771From soilshore-line, Daechung ResorvoirRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Container (Reservoir)
#Environmental#Aquatic#Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_55527.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1007;96_11619;97_14048;98_21961;99_55527&stattab=map
  • Last taxonomy: Aquihabitans daechungensis subclade
  • 16S sequence: JN033775
  • Sequence Identity:
  • Total samples: 235
  • soil counts: 94
  • aquatic counts: 87
  • animal counts: 39
  • plant counts: 15

Safety information

risk assessment

  • @ref: 21261
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21261
  • description: Aquihabitans daechungensis 16S ribosomal RNA gene, partial sequence
  • accession: JN033775
  • length: 1439
  • database: ena
  • NCBI tax ID: 1052257

GC content

@refGC-contentmethod
2126171.8high performance liquid chromatography (HPLC)
3085871.8

External links

@ref: 21261

culture collection no.: DSM 27986, JCM 17787, KCTC 19849, KCTC 19848

straininfo link

  • @ref: 88561
  • straininfo: 406745

literature

  • topic: Phylogeny
  • Pubmed-ID: 23378111
  • title: Aquihabitans daechungensis gen. nov., sp. nov., an actinobacterium isolated from reservoir water.
  • authors: Jin L, Huy H, Kim KK, Lee HG, Kim HS, Ahn CY, Oh HM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.046060-0
  • year: 2013
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21261Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27986Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27986)
30858Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172718828776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88561Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406745.1