Strain identifier
BacDive ID: 24731
Type strain:
Species: Actinopolyspora righensis
Strain Designation: H23
Strain history: <- N. Sabaou, LPBVB, Kouba, Algeria; H 23
NCBI tax ID(s): 995060 (species)
General
@ref: 20253
BacDive-ID: 24731
DSM-Number: 45501
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Actinopolyspora righensis H23 is an aerobe, spore-forming, mesophilic bacterium that was isolated from moderately saline soil.
NCBI tax id
- NCBI tax id: 995060
- Matching level: species
strain history
- @ref: 20253
- history: <- N. Sabaou, LPBVB, Kouba, Algeria; H 23
doi: 10.13145/bacdive24731.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinopolyspora
- species: Actinopolyspora righensis
- full scientific name: Actinopolyspora righensis Meklat et al. 2014
synonyms
- @ref: 20215
- synonym: Actinopolyspora lacussalsi subsp. righensis
@ref: 20253
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinopolysporaceae
genus: Actinopolyspora
species: Actinopolyspora righensis
full scientific name: Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018
strain designation: H23
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 92.223 | |
69480 | 100 | positive |
colony morphology
- @ref: 62970
- incubation period: 20-25 days
multimedia
- @ref: 20253
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45501.jpg
- caption: Medium 1240 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
20253 | NUTRIMENT AGAR WITH 150G/L NACL (DSMZ Medium 1258) | yes | https://mediadive.dsmz.de/medium/1258 | Name: NUTRIMENT AGAR WITH 150 G/L NACL (DSMZ Medium 1258) Composition: NaCl 150.0 g/l Agar 20.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Meat extract 1.0 g/l Distilled water |
20253 | STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240) | yes | https://mediadive.dsmz.de/medium/1240 | Name: STARCH-MINERAL SALT-AGAR + 10% NACL (DSMZ Medium 1240) Composition: NaCl 100.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
20253 | CM + YE MEDIUM (DSMZ Medium 549) | yes | https://mediadive.dsmz.de/medium/549 | Name: CM + YE MEDIUM (DSMZ Medium 549) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.01 g/l HCl 3.646e-05 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20253 | positive | growth | 28 | mesophilic |
62970 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62970
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
20253 | moderately saline soil | Sahara, OuedRigh region, El-Oued | Algeria | DZA | Africa | |
62970 | Soil,Sahara desert | south,Djamâa | Algeria | DZA | Africa | 2006 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_50125.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_495;96_2848;97_3502;98_36039;99_50125&stattab=map
- Last taxonomy: Actinopolyspora righensis
- 16S sequence: HQ918196
- Sequence Identity:
- Total samples: 1
- soil counts: 1
Safety information
risk assessment
- @ref: 20253
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20253
- description: Actinopolyspora righensis strain H23 16S ribosomal RNA gene, partial sequence
- accession: HQ918196
- length: 1367
- database: ena
- NCBI tax ID: 995060
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinopolyspora righensis DSM 45501 | GCA_900116555 | scaffold | ncbi | 995060 |
66792 | Actinopolyspora righensis strain DSM 45501 | 995060.3 | wgs | patric | 995060 |
66792 | Actinopolyspora righensis DSM 45501 | 2616644808 | draft | img | 995060 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 92.785 | no |
flagellated | no | 97.385 | no |
gram-positive | yes | 89.318 | no |
anaerobic | no | 98.55 | yes |
aerobic | yes | 89.609 | yes |
halophile | yes | 75.498 | no |
spore-forming | yes | 78.865 | no |
glucose-ferment | no | 89.783 | no |
thermophile | no | 95.117 | yes |
glucose-util | yes | 88.191 | no |
External links
@ref: 20253
culture collection no.: DSM 45501, CCUG 63368, MTCC 11562
straininfo link
- @ref: 88559
- straininfo: 407034
literature
- topic: Phylogeny
- Pubmed-ID: 23754661
- title: Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria.
- authors: Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-9948-7
- year: 2013
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20253 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45501 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45501) | |
62970 | Curators of the CCUG | https://www.ccug.se/strain?id=63368 | Culture Collection University of Gothenburg (CCUG) (CCUG 63368) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
88559 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407034.1 |