Strain identifier

BacDive ID: 24731

Type strain: Yes

Species: Actinopolyspora righensis

Strain Designation: H23

Strain history: <- N. Sabaou, LPBVB, Kouba, Algeria; H 23

NCBI tax ID(s): 995060 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20253

BacDive-ID: 24731

DSM-Number: 45501

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic

description: Actinopolyspora righensis H23 is an aerobe, spore-forming, mesophilic bacterium that was isolated from moderately saline soil.

NCBI tax id

  • NCBI tax id: 995060
  • Matching level: species

strain history

  • @ref: 20253
  • history: <- N. Sabaou, LPBVB, Kouba, Algeria; H 23

doi: 10.13145/bacdive24731.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinopolyspora
  • species: Actinopolyspora righensis
  • full scientific name: Actinopolyspora righensis Meklat et al. 2014
  • synonyms

    • @ref: 20215
    • synonym: Actinopolyspora lacussalsi subsp. righensis

@ref: 20253

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolysporaceae

genus: Actinopolyspora

species: Actinopolyspora righensis

full scientific name: Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018

strain designation: H23

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.223
69480100positive

colony morphology

  • @ref: 62970
  • incubation period: 20-25 days

multimedia

  • @ref: 20253
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45501.jpg
  • caption: Medium 1240 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20253NUTRIMENT AGAR WITH 150G/L NACL (DSMZ Medium 1258)yeshttps://mediadive.dsmz.de/medium/1258Name: NUTRIMENT AGAR WITH 150 G/L NACL (DSMZ Medium 1258) Composition: NaCl 150.0 g/l Agar 20.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Meat extract 1.0 g/l Distilled water
20253STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240)yeshttps://mediadive.dsmz.de/medium/1240Name: STARCH-MINERAL SALT-AGAR + 10% NACL (DSMZ Medium 1240) Composition: NaCl 100.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
20253CM + YE MEDIUM (DSMZ Medium 549)yeshttps://mediadive.dsmz.de/medium/549Name: CM + YE MEDIUM (DSMZ Medium 549) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.01 g/l HCl 3.646e-05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20253positivegrowth28mesophilic
62970positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62970
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20253moderately saline soilSahara, OuedRigh region, El-OuedAlgeriaDZAAfrica
62970Soil,Sahara desertsouth,DjamâaAlgeriaDZAAfrica2006

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_50125.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_495;96_2848;97_3502;98_36039;99_50125&stattab=map
  • Last taxonomy: Actinopolyspora righensis
  • 16S sequence: HQ918196
  • Sequence Identity:
  • Total samples: 1
  • soil counts: 1

Safety information

risk assessment

  • @ref: 20253
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20253
  • description: Actinopolyspora righensis strain H23 16S ribosomal RNA gene, partial sequence
  • accession: HQ918196
  • length: 1367
  • database: ena
  • NCBI tax ID: 995060

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinopolyspora righensis DSM 45501GCA_900116555scaffoldncbi995060
66792Actinopolyspora righensis strain DSM 45501995060.3wgspatric995060
66792Actinopolyspora righensis DSM 455012616644808draftimg995060

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.785no
flagellatedno97.385no
gram-positiveyes89.318no
anaerobicno98.55yes
aerobicyes89.609yes
halophileyes75.498no
spore-formingyes78.865no
glucose-fermentno89.783no
thermophileno95.117yes
glucose-utilyes88.191no

External links

@ref: 20253

culture collection no.: DSM 45501, CCUG 63368, MTCC 11562

straininfo link

  • @ref: 88559
  • straininfo: 407034

literature

  • topic: Phylogeny
  • Pubmed-ID: 23754661
  • title: Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria.
  • authors: Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-013-9948-7
  • year: 2013
  • mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20253Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45501Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45501)
62970Curators of the CCUGhttps://www.ccug.se/strain?id=63368Culture Collection University of Gothenburg (CCUG) (CCUG 63368)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88559Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407034.1