Strain identifier
BacDive ID: 24715
Type strain: 
Species: Actinophytocola gilvus
Strain Designation: I12A-02593
Strain history: <- Y.-Q. Zhang, Chinese Academy Medical Sci. and Peking Union Medical College, Beijing, China; CPCC 203543 <- H.-M. Sun et al.
NCBI tax ID(s): 1468259 (species)
version 8.1 (current version)
General
@ref: 20906
BacDive-ID: 24715
DSM-Number: 45828
keywords: 16S sequence, Bacteria, mesophilic
description: Actinophytocola gilvus I12A-02593 is a mesophilic bacterium that was isolated from desert soil crust.
NCBI tax id
- NCBI tax id: 1468259
- Matching level: species
strain history
- @ref: 20906
- history: <- Y.-Q. Zhang, Chinese Academy Medical Sci. and Peking Union Medical College, Beijing, China; CPCC 203543 <- H.-M. Sun et al.
doi: 10.13145/bacdive24715.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinophytocola
- species: Actinophytocola gilvus
- full scientific name: Actinophytocola gilvus Sun et al. 2014
@ref: 20906
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinophytocola
species: Actinophytocola gilvus
full scientific name: Actinophytocola gilvus Sun et al. 2014
strain designation: I12A-02593
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20906
- name: GPHF-MEDIUM (DSMZ Medium 553)
- growth: yes
- link: https://mediadive.dsmz.de/medium/553
- composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
culture temp
- @ref: 20906
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20906
- sample type: desert soil crust
- geographic location: Ningxia Hui Autonomous Region, Shapotou region of Tengger Desert
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_155210.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_13737;97_16724;98_30670;99_155210&stattab=map
- Last taxonomy: Actinophytocola gilvus
- 16S sequence: KF955588
- Sequence Identity:
- Total samples: 151
- soil counts: 120
- aquatic counts: 8
- animal counts: 12
- plant counts: 11
Safety information
risk assessment
- @ref: 20906
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20906
- description: Actinophytocola gilvus strain I12A-02593 16S ribosomal RNA gene, partial sequence
- accession: KF955588
- length: 1334
- database: ena
- NCBI tax ID: 1468259
GC content
- @ref: 20906
- GC-content: 70.1
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 20906
culture collection no.: DSM 45828, CPCC 203543, KCTC 29165, NBRC 109453
straininfo link
- @ref: 88545
- straininfo: 400453
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24944338 | Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010. | Sun HM, Zhang T, Yu LY, Lu XX, Mou XZ, Zhang YQ | Int J Syst Evol Microbiol | 10.1099/ijs.0.061051-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 27151064 | Actinophytocola algeriensis sp. nov., an actinobacterium isolated from Saharan soil. | Bouznada K, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001136 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Africa, Northern, Algeria, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20906 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45828 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45828) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88545 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400453.1 |