Strain identifier
BacDive ID: 2469
Type strain: 
Species: Thiolamprovum pedioforme
Strain Designation: strain Taichung, CML2
Strain history: <- B. Eichler, CML 2
NCBI tax ID(s): 82560 (species)
version 8.1 (current version)
General
@ref: 1471
BacDive-ID: 2469
DSM-Number: 3802
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Thiolamprovum pedioforme strain Taichung is an anaerobe, mesophilic bacterium that was isolated from waste water pond.
NCBI tax id
- NCBI tax id: 82560
- Matching level: species
strain history
- @ref: 1471
- history: <- B. Eichler, CML 2
doi: 10.13145/bacdive2469.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Thiolamprovum
- species: Thiolamprovum pedioforme
- full scientific name: Thiolamprovum pedioforme (Eichler and Pfennig 1987) Guyoneaud et al. 1998
synonyms
- @ref: 20215
- synonym: Amoebobacter pedioformis
@ref: 1471
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Thiolamprovum
species: Thiolamprovum pedioforme
full scientific name: Thiolamprovum pedioforme (Eichler and Pfennig 1987) Guyoneaud et al. 1998
strain designation: strain Taichung, CML2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1471
- name: AMOEBOBACTER MEDIUM (DSMZ Medium 422)
- growth: yes
- link: https://mediadive.dsmz.de/medium/422
- composition: Name: AMOEBOBACTER MEDIUM (DSMZ Medium 422) Composition: NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l KH2PO4 0.349999 g/l KCl 0.349999 g/l Ammonium chloride 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Dextrose 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Ammonium acetate 0.25 g/l Yeast extract 0.25 g/l Acetate 0.118088 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Thiosulfate Distilled water
culture temp
- @ref: 1471
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1471
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1471
- sample type: waste water pond
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Wastewater |
| #Environmental | #Aquatic | #Pond (small) |
taxonmaps
- @ref: 69479
- File name: preview.99_161360.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_60714;97_78612;98_106195;99_161360&stattab=map
- Last taxonomy: Thiolamprovum pedioforme subclade
- 16S sequence: FM178271
- Sequence Identity:
- Total samples: 500
- soil counts: 61
- aquatic counts: 183
- animal counts: 229
- plant counts: 27
Safety information
risk assessment
- @ref: 1471
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 1471 | Thiolamprovum pedioforme 16S rRNA gene, strain DSM 3802 | Y12297 | 1459 | ena | 82560 |
| 1471 | Thiolamprovum pedioforme partial 16S rRNA gene, type strain DSM 3802T | FM178271 | 1463 | ena | 82560 |
GC content
- @ref: 1471
- GC-content: 65.5
External links
@ref: 1471
culture collection no.: DSM 3802
straininfo link
- @ref: 72012
- straininfo: 47760
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1471 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3802) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3802 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72012 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47760.1 | StrainInfo: A central database for resolving microbial strain identifiers |