Strain identifier

BacDive ID: 24673

Type strain: Yes

Species: Luteimonas lutimaris

Strain Designation: G3

Strain history: C. O. Jeon G3.

NCBI tax ID(s): 698645 (species)

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General

@ref: 20634

BacDive-ID: 24673

DSM-Number: 25700

keywords: 16S sequence, Bacteria, mesophilic

description: Luteimonas lutimaris G3 is a mesophilic bacterium that was isolated from tidal flat.

NCBI tax id

  • NCBI tax id: 698645
  • Matching level: species

strain history

@refhistory
20634<- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; G3 <- Ch. B. Sil, Chung-Ang Univ., Seoul, Republic of Korea
67770C. O. Jeon G3.

doi: 10.13145/bacdive24673.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Luteimonas
  • species: Luteimonas lutimaris
  • full scientific name: Luteimonas lutimaris Park et al. 2011

@ref: 20634

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacteraceae, not assigned to order

family: Lysobacteraceae

genus: Luteimonas

species: Luteimonas lutimaris

full scientific name: Luteimonas lutimaris Park et al. 2011

strain designation: G3

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 20634
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20634positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20634tidal flatTaean coastRepublic of KoreaKORAsia
67770Tidal flat of the Taean coastRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_145815.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_2080;97_2507;98_3101;99_145815&stattab=map
  • Last taxonomy: Luteimonas lutimaris
  • 16S sequence: GU199001
  • Sequence Identity:
  • Total samples: 37
  • soil counts: 7
  • aquatic counts: 24
  • animal counts: 3
  • plant counts: 3

Safety information

risk assessment

  • @ref: 20634
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20634
  • description: Luteimonas lutimaris strain G3 16S ribosomal RNA gene, complete sequence
  • accession: GU199001
  • length: 1467
  • database: ena
  • NCBI tax ID: 698645

GC content

  • @ref: 67770
  • GC-content: 69.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20634

culture collection no.: DSM 25700, JCM 16916, KACC 14929

straininfo link

  • @ref: 88511
  • straininfo: 399016

literature

  • topic: Phylogeny
  • Pubmed-ID: 21186291
  • title: Luteimonas lutimaris sp. nov., isolated from a tidal flat.
  • authors: Park YJ, Park MS, Lee SH, Park W, Lee K, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.029173-0
  • year: 2010
  • mesh: Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20634Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25700Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25700)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88511Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399016.1