Strain identifier
BacDive ID: 24664
Type strain: 
Species: Vibrio ostreicida
Strain Designation: PP-203
Strain history: <- S. Prado Plana, Univ. Santiago de Compostela, Spain; PP-203 <- S. Prado Plana
NCBI tax ID(s): 526588 (species)
version 7.1 (current version)
General
@ref: 21070
BacDive-ID: 24664
DSM-Number: 21433
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Vibrio ostreicida PP-203 is a mesophilic animal pathogen that was isolated from inner surface of culture containers in bivalve nursery.
NCBI tax id
- NCBI tax id: 526588
- Matching level: species
strain history: <- S. Prado Plana, Univ. Santiago de Compostela, Spain; PP-203 <- S. Prado Plana
doi: 10.13145/bacdive24664.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio ostreicida
- full scientific name: Vibrio ostreicida Prado et al. 2014
@ref: 21070
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio ostreicida
full scientific name: Vibrio ostreicida Prado et al. 2014
strain designation: PP-203
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.522 | |
| 69480 | 99.574 | negative |
Culture and growth conditions
culture medium
- @ref: 21070
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 21070
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.873
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 91.914
Isolation, sampling and environmental information
isolation
- @ref: 21070
- sample type: inner surface of culture containers in bivalve nursery
- geographic location: Galicia
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | |
| #Engineered | #Food production | #Aquaculture |
| #Host | #Invertebrates (Other) | #Mollusca |
Safety information
risk assessment
- @ref: 21070
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21070
- description: Vibrio ostreicida partial 16S rRNA gene, type strain PP-203T
- accession: AJ296159
- length: 1455
- database: ena
- NCBI tax ID: 526588
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio ostreicida PP-203 | GCA_013074385 | scaffold | ncbi | 526588 |
| 66792 | Vibrio ostreicida strain PP-203 | 526588.7 | wgs | patric | 526588 |
GC content
- @ref: 21070
- GC-content: 53.0
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 21070
culture collection no.: DSM 21433, CECT 7398
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/896188 |
| 20218 | http://www.straininfo.net/strains/870361 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24510976 | Vibrio ostreicida sp. nov., a new pathogen of bivalve larvae. | Prado S, Dubert J, Romalde JL, Toranzo AE, Barja JL | Int J Syst Evol Microbiol | 10.1099/ijs.0.051417-0 | 2014 | Animals, Bacterial Typing Techniques, Bivalvia/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Larva/microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vibrio/*classification/genetics/isolation & purification | Genetics |
| Genetics | 32855258 | Draft Genome Sequence of Vibrio ostreicida Strain PP-203, the Type Strain of a Pathogen That Infects Bivalve Larvae. | Kumar RS, Galvis F, Wasson BJ, Saw JH, Oline DK, Barja JL, Ushijima B, Koyack MJ, Prado S, Videau P | Microbiol Resour Announc | 10.1128/MRA.00913-20 | 2020 |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 21070 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21433 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21433) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |