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Strain identifier

BacDive ID: 24664

Type strain: Yes

Species: Vibrio ostreicida

Strain Designation: PP-203

Strain history: <- S. Prado Plana, Univ. Santiago de Compostela, Spain; PP-203 <- S. Prado Plana

NCBI tax ID(s): 526588 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21070

BacDive-ID: 24664

DSM-Number: 21433

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Vibrio ostreicida PP-203 is a mesophilic animal pathogen that was isolated from inner surface of culture containers in bivalve nursery.

NCBI tax id

  • NCBI tax id: 526588
  • Matching level: species

strain history: <- S. Prado Plana, Univ. Santiago de Compostela, Spain; PP-203 <- S. Prado Plana

doi: 10.13145/bacdive24664.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio ostreicida
  • full scientific name: Vibrio ostreicida Prado et al. 2014

@ref: 21070

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio ostreicida

full scientific name: Vibrio ostreicida Prado et al. 2014

strain designation: PP-203

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes91.522
6948099.574negative

Culture and growth conditions

culture medium

  • @ref: 21070
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 21070
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.873

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 91.914

Isolation, sampling and environmental information

isolation

  • @ref: 21070
  • sample type: inner surface of culture containers in bivalve nursery
  • geographic location: Galicia
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment
#Engineered#Food production#Aquaculture
#Host#Invertebrates (Other)#Mollusca

Safety information

risk assessment

  • @ref: 21070
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21070
  • description: Vibrio ostreicida partial 16S rRNA gene, type strain PP-203T
  • accession: AJ296159
  • length: 1455
  • database: ena
  • NCBI tax ID: 526588

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio ostreicida PP-203GCA_013074385scaffoldncbi526588
66792Vibrio ostreicida strain PP-203526588.7wgspatric526588

GC content

  • @ref: 21070
  • GC-content: 53.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21070

culture collection no.: DSM 21433, CECT 7398

straininfo link

@refpassport
20218http://www.straininfo.net/strains/896188
20218http://www.straininfo.net/strains/870361

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24510976Vibrio ostreicida sp. nov., a new pathogen of bivalve larvae.Prado S, Dubert J, Romalde JL, Toranzo AE, Barja JLInt J Syst Evol Microbiol10.1099/ijs.0.051417-02014Animals, Bacterial Typing Techniques, Bivalvia/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Larva/microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Vibrio/*classification/genetics/isolation & purificationGenetics
Genetics32855258Draft Genome Sequence of Vibrio ostreicida Strain PP-203, the Type Strain of a Pathogen That Infects Bivalve Larvae.Kumar RS, Galvis F, Wasson BJ, Saw JH, Oline DK, Barja JL, Ushijima B, Koyack MJ, Prado S, Videau PMicrobiol Resour Announc10.1128/MRA.00913-202020

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21070Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-21433Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21433)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes