Strain identifier

BacDive ID: 24661

Type strain: Yes

Species: Vibrio quintilis

Strain Designation: M62

Strain history: <- CECT <- M. J. Pujalte, Univ. Valencia, Spain

NCBI tax ID(s): 1117707 (species)

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General

@ref: 21067

BacDive-ID: 24661

DSM-Number: 28518

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Vibrio quintilis M62 is a mesophilic, motile bacterium that was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1117707
  • Matching level: species

strain history

  • @ref: 21067
  • history: <- CECT <- M. J. Pujalte, Univ. Valencia, Spain

doi: 10.13145/bacdive24661.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio quintilis
  • full scientific name: Vibrio quintilis Lucena et al. 2013

@ref: 21067

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio quintilis

full scientific name: Vibrio quintilis Lucena et al. 2013

strain designation: M62

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.109
6948099.97negative

multimedia

  • @ref: 21067
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28518.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21067
  • name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 21067
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.661

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
21067-+--+---+-+++--++-+--

Isolation, sampling and environmental information

isolation

  • @ref: 21067
  • sample type: surface seawater
  • geographic location: Valencia, Malvarrosa Beach
  • country: Spain
  • origin.country: ESP
  • continent: Europe
  • latitude: 39.4747
  • longitude: -0.3231

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_8257.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_3794;97_4678;98_6010;99_8257&stattab=map
  • Last taxonomy: Vibrio quintilis subclade
  • 16S sequence: HE613736
  • Sequence Identity:
  • Total samples: 87
  • soil counts: 5
  • aquatic counts: 17
  • animal counts: 63
  • plant counts: 2

Safety information

risk assessment

  • @ref: 21067
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21067
  • description: Vibrio quintilis partial 16S rRNA gene, type strain M62T
  • accession: HE613736
  • length: 1473
  • database: ena
  • NCBI tax ID: 1117707

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio quintilis CECT 7734GCA_900143745contigncbi1117707
66792Vibrio quintilis strain CECT 77341117707.4wgspatric1117707
66792Vibrio quintilis CECT 7734GCA_024529975chromosomencbi1117707

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes85.623no
gram-positiveno99.217no
anaerobicno92.234no
aerobicno50no
halophileno51.809no
spore-formingno93.38no
motileyes89.126no
glucose-fermentyes87.326yes
thermophileno98.938no
glucose-utilyes93.523no

External links

@ref: 21067

culture collection no.: DSM 28518, CAIM 1863, CECT 7734, KCTC 23833

straininfo link

  • @ref: 88500
  • straininfo: 386827

literature

  • topic: Phylogeny
  • Pubmed-ID: 22964422
  • title: Vibrio aestivus sp. nov. and Vibrio quintilis sp. nov., related to Marisflavi and Gazogenes clades, respectively.
  • authors: Lucena T, Ruvira MA, Arahal DR, Macian MC, Pujalte MJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2012.08.002
  • year: 2012
  • mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Spain, Temperature, Vibrio/*classification/genetics/*isolation & purification/physiology
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21067Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28518Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28518)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88500Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID386827.1