Strain identifier
BacDive ID: 24658
Type strain: 
Species: Photobacterium aestuarii
Strain Designation: YA11
Strain history: C. O. Jeon YA11.
NCBI tax ID(s): 1028750 (species)
version 8.1 (current version)
General
@ref: 20732
BacDive-ID: 24658
DSM-Number: 28821
keywords: 16S sequence, Bacteria, psychrophilic
description: Photobacterium aestuarii YA11 is a psychrophilic bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 1028750
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20732 | <- Ch.-O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; YA11 <- S. H. Jeong, Chung-Ang Univ. |
| 67770 | C. O. Jeon YA11. |
doi: 10.13145/bacdive24658.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Photobacterium
- species: Photobacterium aestuarii
- full scientific name: Photobacterium aestuarii Lo et al. 2014
@ref: 20732
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Photobacterium
species: Photobacterium aestuarii
full scientific name: Photobacterium aestuarii Lo et al. 2014
strain designation: YA11
type strain: yes
Morphology
multimedia
- @ref: 20732
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28821.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 20732
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20732 | positive | growth | 20 | psychrophilic |
| 67770 | positive | growth | 20 | psychrophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20732 | tidal flat sediment | Yeongam Bay | Republic of Korea | KOR | Asia | 34.7478 | 126.369 |
| 67770 | Tidal flat of the Yeongam bay in South Korea |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 20732
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20732
- description: Photobacterium aestuarii strain YA11 from South Korea 16S ribosomal RNA gene, partial sequence
- accession: JF751050
- length: 1407
- database: ena
- NCBI tax ID: 1028750
GC content
- @ref: 20732
- GC-content: 44.2
- method: fluorimetric
External links
@ref: 20732
culture collection no.: DSM 28821, JCM 18592, KACC 16912
straininfo link
- @ref: 88497
- straininfo: 397496
literature
- topic: Phylogeny
- Pubmed-ID: 24158952
- title: Photobacterium aestuarii sp. nov., a marine bacterium isolated from a tidal flat.
- authors: Lo N, Jin HM, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056861-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, Bays, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Photobacterium/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20732 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28821 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28821) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 88497 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397496.1 |