Strain identifier
BacDive ID: 24653
Type strain:
Species: Thermococcus paralvinellae
Strain Designation: ES1
Strain history: <- J. Holden, UMASS; ES1 <- R. J. Pledger
NCBI tax ID(s): 582419 (species)
General
@ref: 21062
BacDive-ID: 24653
DSM-Number: 27261
keywords: genome sequence, 16S sequence, Archaea, anaerobe, spore-forming, hyperthermophilic, Gram-negative
description: Thermococcus paralvinellae ES1 is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from polychaete worm of the genus Paralvinella in a fragment of a black smoker.
NCBI tax id
- NCBI tax id: 582419
- Matching level: species
strain history
- @ref: 21062
- history: <- J. Holden, UMASS; ES1 <- R. J. Pledger
doi: 10.13145/bacdive24653.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Thermococci
- order: Thermococcales
- family: Thermococcaceae
- genus: Thermococcus
- species: Thermococcus paralvinellae
- full scientific name: Thermococcus paralvinellae Hensley et al. 2014
@ref: 21062
domain: Archaea
phylum: Euryarchaeota
class: Thermococci
order: Thermococcales
family: Thermococcaceae
genus: Thermococcus
species: Thermococcus paralvinellae
full scientific name: Thermococcus paralvinellae Hensley et al. 2014
strain designation: ES1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.942
Culture and growth conditions
culture medium
- @ref: 21062
- name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)
- growth: yes
- link: https://mediadive.dsmz.de/medium/760
- composition: Name: MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
21062 | positive | growth | 80 | hyperthermophilic | |
69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 98.776
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | no | 99.792 |
Isolation, sampling and environmental information
isolation
- @ref: 21062
- sample type: polychaete worm of the genus Paralvinella in a fragment of a black smoker
- host species: Paralvinella
- geographic location: north-eastern Pacific Ocean, Endeavour Segment of the Juan de Fuca Ridge at a depth of 2200 m (47° 57' 00'' N 129° 06' 00'' W)
- country: Canada
- origin.country: CAN
- continent: North America
- latitude: 47.95
- longitude: -129.1
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Hydrothermal vent |
#Host | #Invertebrates (Other) | #Annelida |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 21062
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21062
- description: Thermococcus paralvinellae strain ES1 16S ribosomal RNA gene, partial sequence
- accession: U82238
- length: 1391
- database: ena
- NCBI tax ID: 582419
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thermococcus paralvinellae ES1 | GCA_000517445 | complete | ncbi | 582419 |
66792 | Thermococcus paralvinellae ES1 | 2558860254 | complete | img | 582419 |
GC content
- @ref: 21062
- GC-content: 40.8
- method: sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 82.74 | no |
flagellated | no | 96.462 | no |
gram-positive | no | 97.43 | no |
anaerobic | yes | 98.749 | no |
halophile | no | 70.181 | no |
spore-forming | no | 97.01 | no |
thermophile | yes | 99.741 | no |
glucose-util | yes | 75.473 | no |
aerobic | no | 97.611 | no |
glucose-ferment | no | 61.936 | no |
External links
@ref: 21062
culture collection no.: DSM 27261, KACC 17923
straininfo link
- @ref: 88493
- straininfo: 398398
literature
- topic: Phylogeny
- Pubmed-ID: 25082851
- title: Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.
- authors: Hensley SA, Jung JH, Park CS, Holden JF
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.066100-0
- year: 2014
- mesh: Animals, DNA, Archaeal/genetics, Hydrothermal Vents/*microbiology, Molecular Sequence Data, Pacific Ocean, *Phylogeny, Polychaeta/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thermococcus/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21062 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27261 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27261) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
88493 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398398.1 |