Strain identifier
BacDive ID: 24647
Type strain: 
Species: Hazenella coriacea
Strain Designation: 23436
Strain history: <- W. Wolfgang, Wadsworth Center, NYS Dept. Health, USA; 23436 <- Wadsworth Center, NYS Dept. Health, USA
NCBI tax ID(s): 1179467 (species)
version 8.1 (current version)
General
@ref: 21290
BacDive-ID: 24647
DSM-Number: 45707
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Hazenella coriacea 23436 is a mesophilic human pathogen that was isolated from clinical specimen, human blood.
NCBI tax id
- NCBI tax id: 1179467
- Matching level: species
strain history
- @ref: 21290
- history: <- W. Wolfgang, Wadsworth Center, NYS Dept. Health, USA; 23436 <- Wadsworth Center, NYS Dept. Health, USA
doi: 10.13145/bacdive24647.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Hazenella
- species: Hazenella coriacea
- full scientific name: Hazenella coriacea Buss et al. 2013
@ref: 21290
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Hazenella
species: Hazenella coriacea
full scientific name: Hazenella coriacea Buss et al. 2013
strain designation: 23436
type strain: yes
Morphology
colony morphology
- @ref: 21290
- incubation period: 2-3 days
multimedia
- @ref: 21290
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45707.jpg
- caption: Medium 693 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21290 | BHI MEDIUM (DSMZ Medium 215) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf | |
| 21290 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | yes | https://mediadive.dsmz.de/medium/535a | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 21290 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 21290
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21290
- sample type: clinical specimen, human blood
- geographic location: New York State, Rockland County
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Medical environment | #Clinic |
| #Infection | #Patient | #Specimen |
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_98749.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_284;96_40170;97_51249;98_67570;99_98749&stattab=map
- Last taxonomy: Hazenella coriacea subclade
- 16S sequence: JQ798970
- Sequence Identity:
- Total samples: 1666
- soil counts: 1119
- aquatic counts: 236
- animal counts: 186
- plant counts: 125
Safety information
risk assessment
- @ref: 21290
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21290
- description: Hazenella coriacea strain 23436 16S ribosomal RNA gene, partial sequence
- accession: JQ798970
- length: 1426
- database: ena
- NCBI tax ID: 1179467
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hazenella coriacea DSM 45707 | GCA_004341825 | contig | ncbi | 1179467 |
| 66792 | Hazenella coriacea strain DSM 45707 | 1179467.3 | wgs | patric | 1179467 |
| 66792 | Hazenella coriacea DSM 45707 | 2784132176 | draft | img | 1179467 |
| 66792 | Hazenella coriacea DSM 45707 | 2784746794 | draft | img | 1179467 |
GC content
- @ref: 21290
- GC-content: 37.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 85.248 | no |
| gram-positive | yes | 84.841 | no |
| anaerobic | no | 92.342 | no |
| aerobic | yes | 80.274 | no |
| halophile | no | 85.502 | no |
| spore-forming | yes | 90.981 | no |
| flagellated | no | 94.639 | no |
| thermophile | yes | 90.238 | no |
| glucose-util | yes | 86.061 | no |
| glucose-ferment | no | 94.327 | no |
External links
@ref: 21290
culture collection no.: DSM 45707, LMG 27204
straininfo link
- @ref: 88487
- straininfo: 401487
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23728377 | Hazenella coriacea gen. nov., sp. nov., isolated from clinical specimens. | Buss SN, Cole JA, Hannett GE, Nazarian EJ, Nazarian L, Coorevits A, Van Landschoot A, De Vos P, Schumann P, Musser KA, Wolfgang WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.050914-0 | 2013 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Blood/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Humans, Molecular Sequence Data, New York, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Pathogenicity |
| Phylogeny | 24907264 | Geothermomicrobium terrae gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae. | Zhou EM, Yu TT, Liu L, Ming H, Yin YR, Dong L, Tseng M, Nie GX, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.059766-0 | 2014 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21290 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45707 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45707) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88487 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401487.1 |