Strain identifier
BacDive ID: 24642
Type strain: 
Species: Thermoactinomyces daqus
Strain Designation: H-18
Strain history: <- Y. Ge, China National Research Inst. of Food & Fermentation Industries, Beijing; H-18 <- M. Zhang
NCBI tax ID(s): 1329516 (species)
version 8.1 (current version)
General
@ref: 20866
BacDive-ID: 24642
DSM-Number: 45914
keywords: genome sequence, 16S sequence, Bacteria
description: Thermoactinomyces daqus H-18 is a bacterium that was isolated from high-temperature daqu, a fermentation starter used in the production of a sesame-flavour liquor.
NCBI tax id
- NCBI tax id: 1329516
- Matching level: species
strain history
- @ref: 20866
- history: <- Y. Ge, China National Research Inst. of Food & Fermentation Industries, Beijing; H-18 <- M. Zhang
doi: 10.13145/bacdive24642.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Thermoactinomyces
- species: Thermoactinomyces daqus
- full scientific name: Thermoactinomyces daqus Yao et al. 2014
@ref: 20866
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Thermoactinomyces
species: Thermoactinomyces daqus
full scientific name: Thermoactinomyces daqus Yao et al. 2014
strain designation: H-18
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 20866
- sample type: high-temperature daqu, a fermentation starter used in the production of a sesame-flavour liquor
- geographic location: Shandong Province, Zibo, Shandong Bandaojing Co. Ltd
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Condition | #Thermophilic (>45°C) | |
| #Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_4383.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_2195;97_2655;98_3292;99_4383&stattab=map
- Last taxonomy: Thermoactinomycetaceae
- 16S sequence: KF590624
- Sequence Identity:
- Total samples: 12546
- soil counts: 7337
- aquatic counts: 1922
- animal counts: 1670
- plant counts: 1617
Safety information
risk assessment
- @ref: 20866
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20866
- description: Thermoactinomyces daqus strain H-18 16S ribosomal RNA gene, partial sequence
- accession: KF590624
- length: 1506
- database: ena
- NCBI tax ID: 1329516
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermoactinomyces daqus H-18 | GCA_000763315 | contig | ncbi | 1329516 |
| 66792 | Thermoactinomyces daqus H-18 | 1329516.3 | wgs | patric | 1329516 |
| 66792 | Thermoactinomyces daqus H-18 | 2617271285 | draft | img | 1329516 |
GC content
- @ref: 20866
- GC-content: 49.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.147 | no |
| gram-positive | yes | 84.828 | no |
| anaerobic | no | 98.495 | no |
| halophile | no | 87.219 | no |
| spore-forming | yes | 94.577 | no |
| glucose-util | yes | 92.284 | no |
| aerobic | yes | 92.593 | no |
| flagellated | no | 94.042 | no |
| thermophile | yes | 98.078 | no |
| glucose-ferment | no | 90.573 | no |
External links
@ref: 20866
culture collection no.: DSM 45914, CICC 10681
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24048866 | Thermoactinomyces daqus sp. nov., a thermophilic bacterium isolated from high-temperature Daqu. | Yao S, Liu Y, Zhang M, Zhang X, Li H, Zhao T, Xin C, Xu L, Zhang B, Cheng C | Int J Syst Evol Microbiol | 10.1099/ijs.0.055509-0 | 2013 | Alcoholic Beverages/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Fermentation, Hot Temperature, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Thermoactinomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Stress |
| Genetics | 25573938 | Genome Sequence of Thermoactinomyces daqus H-18, a Novel Thermophilic Species Isolated from High-Temperature Daqu. | Yao S, Xu Y, Xin C, Xu L, Liu Y, Li H, Li J, Zhao J, Cheng C | Genome Announc | 10.1128/genomeA.01394-14 | 2015 | Phylogeny | |
| Phylogeny | 25991661 | Thermoactinomyces guangxiensis sp. nov., a thermophilic actinomycete isolated from mushroom compost. | Wu H, Liu B, Pan S | Int J Syst Evol Microbiol | 10.1099/ijs.0.000342 | 2015 | *Agaricales, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology, Spores, Bacterial, Thermoactinomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20866 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45914 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45914) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |