Strain identifier
BacDive ID: 24640
Type strain: 
Species: Thermus tengchongensis
Strain history: <- S-K Tang, Yunnan Inst., China
NCBI tax ID(s): 1214928 (species)
version 8.1 (current version)
General
@ref: 20869
BacDive-ID: 24640
DSM-Number: 25900
keywords: genome sequence, 16S sequence, Bacteria, aerobe, thermophilic, rod-shaped
description: Thermus tengchongensis DSM 25900 is an aerobe, thermophilic, rod-shaped bacterium that was isolated from geothermally heated soil.
NCBI tax id
- NCBI tax id: 1214928
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20869 | <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 77924 |
| 67771 | <- S-K Tang, Yunnan Inst., China |
doi: 10.13145/bacdive24640.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Thermus
- species: Thermus tengchongensis
- full scientific name: Thermus tengchongensis Yu et al. 2013
@ref: 20869
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Thermus
species: Thermus tengchongensis
full scientific name: Thermus tengchongensis Yu et al. 2013
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain |
|---|---|---|
| 67771 | rod-shaped | |
| 67771 | negative |
colony morphology
- @ref: 20869
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 20869
- name: THERMUS MEDIUM (DSMZ Medium 1722)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1722
- composition: Name: T5 MEDIUM modified (DSMZ Medium 1722) Composition: Agar 20.0 g/l Yeast extract 2.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Tryptone 0.5 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20869 | positive | growth | 65 | thermophilic |
| 67771 | positive | growth | 65 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20869 | geothermally heated soil | Yunnan province, Tengchong, Rehai National Park (24.95002° N 98.43742° E) | China | CHN | Asia | 24.95 | 98.4374 |
| 67771 | From a geothermally heated soil | Rehai National Park, Tengchong, Yunnan province | China | CHN | Asia | 24.95 | 98.4374 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Thermophilic (>45°C) | |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_1459.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_457;97_524;98_1150;99_1459&stattab=map
- Last taxonomy: Thermus tengchongensis subclade
- 16S sequence: JX112365
- Sequence Identity:
- Total samples: 1489
- soil counts: 36
- aquatic counts: 440
- animal counts: 982
- plant counts: 31
Safety information
risk assessment
- @ref: 20869
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20869
- description: Thermus tengchongensis 16S ribosomal RNA gene, complete sequence
- accession: JX112365
- length: 1526
- database: ena
- NCBI tax ID: 1214928
Genome sequences
- @ref: 66792
- description: Thermus tengchongensis YIM 77924
- accession: GCA_021462405
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1214928
GC content
| @ref | GC-content | method |
|---|---|---|
| 20869 | 66.64 | thermal denaturation, midpoint method (Tm) |
| 67771 | 66.64 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.233 | no |
| gram-positive | no | 96.605 | yes |
| anaerobic | no | 95.918 | yes |
| aerobic | yes | 77.597 | yes |
| halophile | no | 80.767 | no |
| spore-forming | no | 90.324 | no |
| glucose-ferment | no | 85.714 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 86.467 | no |
| motile | no | 85.864 | no |
External links
@ref: 20869
culture collection no.: DSM 25900, CCTCC AB 2012063, KCTC 32025, YIM 77924
straininfo link
- @ref: 88482
- straininfo: 398877
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23104072 | Thermus tengchongensis sp. nov., isolated from a geothermally heated soil sample in Tengchong, Yunnan, south-west China. | Yu TT, Yao JC, Ming H, Yin YR, Zhou EM, Liu MJ, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9833-9 | 2012 | Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geothermal Energy, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thermus/*classification/genetics/*isolation & purification/physiology | Stress |
| Phylogeny | 25920724 | Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample. | Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000289 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thermus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20869 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25900 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25900) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88482 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398877.1 |