Strain identifier
BacDive ID: 24629
Type strain: 
Species: Streptomyces pluripotens
Strain history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 135
NCBI tax ID(s): 1355015 (species)
version 8.1 (current version)
General
@ref: 21058
BacDive-ID: 24629
DSM-Number: 42140
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces pluripotens DSM 42140 is a mesophilic bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 1355015
- Matching level: species
strain history
- @ref: 21058
- history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 135
doi: 10.13145/bacdive24629.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces pluripotens
- full scientific name: Streptomyces pluripotens Lee et al. 2014
@ref: 21058
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces pluripotens
full scientific name: Streptomyces pluripotens Lee et al. 2014 emend. Nouioui et al. 2018
type strain: yes
Morphology
multimedia
- @ref: 21058
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42140.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21058 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 21058 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 21058 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 21058
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 21058
- compound: bacteriocin
Isolation, sampling and environmental information
isolation
- @ref: 21058
- sample type: mangrove soil
- geographic location: Peninsular, State of Pahang, Tanjung Lumpur river (3° 48' 11.1'' N 103° 26' 6.9'' E)
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_486.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_486&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: KF195922
- Sequence Identity:
- Total samples: 5
- aquatic counts: 1
- animal counts: 3
- plant counts: 1
Safety information
risk assessment
- @ref: 21058
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21058
- description: Streptomyces pluripotens strain MUSC 135 16S ribosomal RNA gene, partial sequence
- accession: KF195922
- length: 1491
- database: ena
- NCBI tax ID: 1355015
GC content
- @ref: 21058
- GC-content: 70.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21058
culture collection no.: DSM 42140, MCCC 1K00252, MUSC 135
straininfo link
- @ref: 88472
- straininfo: 402602
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24994773 | Streptomyces pluripotens sp. nov., a bacteriocin-producing streptomycete that inhibits meticillin-resistant Staphylococcus aureus. | Lee LH, Zainal N, Azman AS, Eng SK, Ab Mutalib NS, Yin WF, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.065045-0 | 2014 | *Antibiosis, Avicennia, Bacterial Typing Techniques, Bacteriocins/*biosynthesis, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Malaysia, Methicillin-Resistant Staphylococcus aureus, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolism, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 25162061 | Diversity and antimicrobial activities of actinobacteria isolated from tropical mangrove sediments in Malaysia. | Lee LH, Zainal N, Azman AS, Eng SK, Goh BH, Yin WF, Ab Mutalib NS, Chan KG | ScientificWorldJournal | 10.1155/2014/698178 | 2014 | Actinobacteria/classification/isolation & purification/*metabolism, Anti-Infective Agents/isolation & purification/*pharmacology, Bacteria/drug effects, *Biodiversity, Drug Discovery, Geologic Sediments/*microbiology, Malaysia, Microbial Sensitivity Tests, Phylogeny, *Wetlands | Enzymology |
| Genetics | 26452302 | Genome sequence of Streptomyces pluripotens MUSC 135(T) exhibiting antibacterial and antioxidant activity. | Ser HL, Tan WS, Ab Mutalib NS, Cheng HJ, Yin WF, Chan KG, Lee LH | Mar Genomics | 10.1016/j.margen.2015.09.010 | 2015 | Aeromonas hydrophila/drug effects, Anti-Bacterial Agents/metabolism/*pharmacology, Antioxidants/metabolism/*pharmacology, Gene Expression Regulation, Bacterial/*physiology, *Genome, Bacterial, Methicillin-Resistant Staphylococcus aureus/drug effects, Salmonella typhi/drug effects, Streptomyces/genetics | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21058 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42140 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42140) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88472 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402602.1 |