Strain identifier
BacDive ID: 24624
Type strain: 
Species: Streptomyces hoynatensis
Strain Designation: S1412
Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; S1412 <- A. Veyisoglu
NCBI tax ID(s): 1141874 (species)
version 8.1 (current version)
General
@ref: 21053
BacDive-ID: 24624
DSM-Number: 42069
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces hoynatensis S1412 is a spore-forming, mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1141874
- Matching level: species
strain history
- @ref: 21053
- history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; S1412 <- A. Veyisoglu
doi: 10.13145/bacdive24624.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces hoynatensis
- full scientific name: Streptomyces hoynatensis Veyisoglu and Sahin 2014
@ref: 21053
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces hoynatensis
full scientific name: Streptomyces hoynatensis Veyisoglu and Sahin 2014
strain designation: S1412
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.222 | |
| 69480 | 100 | positive |
multimedia
- @ref: 21053
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42069.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21053 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf | |
| 21053 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
| 21053 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 21053 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 21053
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 21053
- sample type: marine sediment
- geographic location: Karadeniz, along the Melet River offshore (40° 59.6509 N 37° 58.9539 E) at a depth of 12 m
- country: Turkey
- origin.country: TUR
- continent: Asia
- latitude: 40.9942
- longitude: 37.9826
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_185388.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1457;97_88662;98_120609;99_185388&stattab=map
- Last taxonomy: Streptomyces hoynatensis subclade
- 16S sequence: JQ582693
- Sequence Identity:
- Total samples: 217
- soil counts: 69
- aquatic counts: 13
- animal counts: 24
- plant counts: 111
Safety information
risk assessment
- @ref: 21053
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21053
- description: Streptomyces hoynatensis strain S1412 16S ribosomal RNA gene, partial sequence
- accession: JQ582693
- length: 1479
- database: ena
- NCBI tax ID: 1141874
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces hoynatensis KCTC 29097 | GCA_003626535 | contig | ncbi | 1141874 |
| 66792 | Streptomyces hoynatensis strain KCTC 29097 | 1141874.3 | wgs | patric | 1141874 |
| 66792 | Streptomyces hoynatensis KCTC 29097 | 2867325999 | draft | img | 1141874 |
GC content
- @ref: 21053
- GC-content: 73.1
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 92.246 | no |
| flagellated | no | 98.315 | no |
| gram-positive | yes | 91.396 | no |
| anaerobic | no | 99.098 | no |
| aerobic | yes | 90.746 | no |
| halophile | no | 78.409 | no |
| spore-forming | yes | 93.751 | no |
| glucose-util | yes | 88.56 | no |
| thermophile | no | 95.731 | yes |
| glucose-ferment | no | 88.723 | no |
External links
@ref: 21053
culture collection no.: DSM 42069, KCTC 29097
straininfo link
- @ref: 88468
- straininfo: 404508
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24243968 | Streptomyces hoynatensis sp. nov., isolated from deep marine sediment. | Veyisoglu A, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijs.0.055640-0 | 2013 | Bacterial Typing Techniques, Black Sea, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics, Turkey, Vitamin K 2/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 25237147 | Streptomyces burgazadensis sp. nov., isolated from soil. | Saricaoglu S, Isik K, Veyisoglu A, Saygin H, Cetin D, Guven K, Sproer C, Klenk HP, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijs.0.065870-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21053 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42069 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42069) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88468 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404508.1 |