Strain identifier
BacDive ID: 24623
Type strain: 
Species: Streptomyces karpasiensis
Strain Designation: K413
Strain history: <- Nevzat Sahin
NCBI tax ID(s): 1187859 (species)
version 8.1 (current version)
General
@ref: 21052
BacDive-ID: 24623
DSM-Number: 42068
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Streptomyces karpasiensis K413 is an aerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1187859
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21052 | <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; K413 <- A. Veyisoglu |
| 67771 | <- Nevzat Sahin |
doi: 10.13145/bacdive24623.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces karpasiensis
- full scientific name: Streptomyces karpasiensis Veyisoglu et al. 2014
@ref: 21052
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces karpasiensis
full scientific name: Streptomyces karpasiensis Veyisoglu et al. 2014
strain designation: K413
type strain: yes
Morphology
multimedia
- @ref: 21052
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42068.jpg
- caption: Medium 987 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21052 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 21052 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21052 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 21052 | soil | Magusa, Karpaz National Park | Cyprus | CYP | Europe |
| 67771 | Soil, Agricultural Estate | Cyprus | CYP | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_11748.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1811;97_7136;98_8814;99_11748&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: JQ864430
- Sequence Identity:
- Total samples: 2369
- soil counts: 1228
- aquatic counts: 233
- animal counts: 319
- plant counts: 589
Safety information
risk assessment
- @ref: 21052
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21052
- description: Streptomyces karpasiensis strain K413 16S ribosomal RNA gene, partial sequence
- accession: JQ864430
- length: 1468
- database: ena
- NCBI tax ID: 1187859
GC content
- @ref: 21052
- GC-content: 71.9
- method: fluorimetric
External links
@ref: 21052
culture collection no.: DSM 42068, KCTC 29096
straininfo link
- @ref: 88467
- straininfo: 399484
literature
- topic: Phylogeny
- Pubmed-ID: 24243969
- title: Streptomyces karpasiensis sp. nov., isolated from soil.
- authors: Veyisoglu A, Tatar D, Cetin D, Guven K, Sahin N
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.056275-0
- year: 2013
- mesh: Bacterial Typing Techniques, Cell Wall/chemistry, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21052 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42068 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42068) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88467 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399484.1 |