Archive BacDiveID:10.13145/bacdive24622.20230509.8.1

Strain identifier

BacDive ID: 24622

Type strain:

Species: Streptomyces microflavus

Strain Designation: Park S63

Strain history: <- LMG; LMG 21390 <- D. Park, Kangwon National University <- J. Kim, Alpine Agricultural Experiment Station, Korea

NCBI tax ID(s): 164114 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21051

BacDive-ID: 24622

DSM-Number: 41928

keywords: 16S sequence, Bacteria, mesophilic, plant pathogen

description: Streptomyces microflavus Park S63 is a mesophilic plant pathogen that was isolated from potato cv. Atlantic, raised corky lesions.

NCBI tax id

NCBI tax id: 164114
Matching level: species

strain history

@ref: 21051
history: <- LMG; LMG 21390 <- D. Park, Kangwon National University <- J. Kim, Alpine Agricultural Experiment Station, Korea

doi: 10.13145/bacdive24622.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces microflavus
full scientific name: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

synonyms

@ref	synonym
20215	Actinomyces alboviridis
20215	Actinomyces fulvissimus
20215	Actinomyces willmorei
20215	Actinomyces lipmanii
20215	Actinomyces griseus subsp. alpha
20215	Streptomyces fulvissimus
20215	Streptomyces griseus subsp. alpha
20215	Streptomyces griseus subsp. cretosus
20215	Actinomyces microflavus
20215	Streptomyces lipmanii
20215	Streptomyces alboviridis
20215	Streptomyces willmorei
20215	Streptomyces luridiscabiei

@ref: 21051

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces microflavus

full scientific name: Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 emend. Lanoot et al. 2005

strain designation: Park S63

type strain: no

Morphology

multimedia

@ref: 21051
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41928.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
21051	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21051	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
21051	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref: 21051
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 21051
sample type: potato cv. Atlantic, raised corky lesions
geographic location: Jeju Island
country: Republic of Korea
origin.country: KOR
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Plant	#Root (Rhizome)

taxonmaps

@ref: 69479
File name: preview.99_135.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
Last taxonomy: Streptomyces
16S sequence: AF361784
Sequence Identity:
Total samples: 4030
soil counts: 2441
aquatic counts: 286
animal counts: 1009
plant counts: 294

Safety information

risk assessment

@ref: 21051
pathogenicity plant: yes
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 21051
description: Streptomyces sp. S63 16S ribosomal RNA gene, partial sequence
accession: AF361784
length: 1527
database: ena
NCBI tax ID: 164114

External links

@ref: 21051

culture collection no.: DSM 41928, KACC 20252, LMG 21390

straininfo link

@ref: 88466
straininfo: 93888

literature

topic: Phylogeny
Pubmed-ID: 14657144
title: Streptomyces luridiscabiei sp. nov., Streptomyces puniciscabiei sp. nov. and Streptomyces niveiscabiei sp. nov., which cause potato common scab disease in Korea.
authors: Park DH, Kim JS, Kwon SW, Wilson C, Yu YM, Hur JH, Lim CK
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijs.0.02629-0
year: 2003
mesh: Base Sequence, DNA Primers, Molecular Sequence Data, Plant Diseases/microbiology, Polymerase Chain Reaction, Solanum tuberosum/*microbiology, Species Specificity, Streptomyces/*classification/genetics/isolation & purification/pathogenicity
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21051	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-41928	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41928)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
88466	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID93888.1