Strain identifier

BacDive ID: 24621

Type strain: Yes

Species: Streptomyces abietis

Strain Designation: A 191

Strain history: <- K. Fujii, Yamaguchi University, Fac. of Agriculture; A 191

NCBI tax ID(s): 1227734 (species)

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General

@ref: 21050

BacDive-ID: 24621

DSM-Number: 42080

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces abietis A 191 is an aerobe, spore-forming, mesophilic bacterium that was isolated from topsoil of a pine forest.

NCBI tax id

  • NCBI tax id: 1227734
  • Matching level: species

strain history

  • @ref: 21050
  • history: <- K. Fujii, Yamaguchi University, Fac. of Agriculture; A 191

doi: 10.13145/bacdive24621.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces abietis
  • full scientific name: Streptomyces abietis Fujii et al. 2013

@ref: 21050

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces abietis

full scientific name: Streptomyces abietis Fujii et al. 2013

strain designation: A 191

type strain: yes

Morphology

cell morphology

  • @ref: 31130
  • gram stain: positive

pigmentation

  • @ref: 31130
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21050ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
21050GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 21050
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31130
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31130
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3113022599arabinose+carbon source
3113017057cellobiose+carbon source
3113028757fructose+carbon source
3113017234glucose+carbon source
3113029864mannitol+carbon source
3113017268myo-inositol+carbon source
3113018222xylose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 21050
  • sample type: topsoil of a pine forest
  • geographic location: Hokkaido prefecture
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 21050
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21050
  • description: Streptomyces abietis gene for 16S rRNA, partial sequence
  • accession: AB744663
  • length: 1454
  • database: ena
  • NCBI tax ID: 1227734

GC content

@refGC-contentmethod
2105071.3high performance liquid chromatography (HPLC)
3113071.3

External links

@ref: 21050

culture collection no.: DSM 42080, NBRC 109094

straininfo link

  • @ref: 88465
  • straininfo: 399818

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23990653Streptomyces abietis sp. nov., a cellulolytic bacterium isolated from soil of a pine forest.Fujii K, Satomi M, Fukui Y, Matsunobu S, Morifuku Y, Enokida YInt J Syst Evol Microbiol10.1099/ijs.0.053025-02013Abies/*microbiology, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Trees/microbiologyGenetics
Phylogeny29582193Streptomyces urticae sp. nov., isolated from rhizosphere soil of Urtica urens L.Piao C, Ling L, Zhao J, Jin L, Jiang S, Guo X, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-018-1072-22018DNA, Bacterial, Metabolomics/methods, Molecular Typing, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Rosales/*microbiology, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/ultrastructurePhenotype
Phylogeny31639072Streptomyces oryziradicis sp. nov., a novel actinomycete isolated from rhizosphere soil of rice (Oryza sativa L.).Li C, Cao P, Jiang M, Sun T, Shen Y, Xiang W, Zhao J, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0037772020Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21050Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42080Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42080)
31130Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172745928776041
88465Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399818.1