Strain identifier

BacDive ID: 24618

Type strain: Yes

Species: Streptomyces wuyuanensis

Strain Designation: FX61

Strain history: <- Beijing Institute of Technology, China

NCBI tax ID(s): 1196353 (species)

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General

@ref: 21047

BacDive-ID: 24618

DSM-Number: 42132

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, spiral-shaped

description: Streptomyces wuyuanensis FX61 is an aerobe, spore-forming, mesophilic bacterium that was isolated from saline sample.

NCBI tax id

  • NCBI tax id: 1196353
  • Matching level: species

strain history

@refhistory
21047<- KCTC; KCTC 29112
67771<- Beijing Institute of Technology, China

doi: 10.13145/bacdive24618.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces wuyuanensis
  • full scientific name: Streptomyces wuyuanensis Zhang et al. 2013

@ref: 21047

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces wuyuanensis

full scientific name: Streptomyces wuyuanensis Zhang et al. 2013

strain designation: FX61

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
30900positivespiral-shapedno
69480no94.026
69480positive100

pigmentation

  • @ref: 30900
  • production: yes

multimedia

  • @ref: 21047
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42132.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 21047
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21047positivegrowth28mesophilic
30900positivegrowth15-40
30900positiveoptimum28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30900positivegrowth4.0-12.0alkaliphile
30900positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30900aerobe
67771aerobe

spore formation

@refspore formationconfidence
30900yes
69481yes100
69480yes100

halophily

  • @ref: 30900
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-9 %

observation

@refobservation
30900aggregates in chains
67771quinones: MK-9(H6)(59.6 %), MK-9(H8)(27.0 %), MK-9(H4)(8.6 %)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3090016449alanine+carbon source
3090022599arabinose+carbon source
3090029016arginine+carbon source
3090022653asparagine+carbon source
3090028757fructose+carbon source
3090028260galactose+carbon source
3090017234glucose+carbon source
3090015428glycine+carbon source
3090025017leucine+carbon source
3090029864mannitol+carbon source
3090017268myo-inositol+carbon source
3090028044phenylalanine+carbon source
3090016634raffinose+carbon source
3090026546rhamnose+carbon source
3090017992sucrose+carbon source
3090016296D-tryptophan+carbon source
3090018222xylose+carbon source

enzymes

@refvalueactivityec
30900catalase+1.11.1.6
30900gelatinase+
30900urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21047saline sampleInner Mongolian Autonomous RegionChinaCHNAsia
67771SoilChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_2182.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_1401;98_1703;99_2182&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: JX010725
  • Sequence Identity:
  • Total samples: 53
  • soil counts: 28
  • aquatic counts: 9
  • animal counts: 2
  • plant counts: 14

Safety information

risk assessment

  • @ref: 21047
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21047
  • description: Streptomyces wuyuanensis strain FX61 16S ribosomal RNA gene, partial sequence
  • accession: JX010725
  • length: 1403
  • database: ena
  • NCBI tax ID: 1196353

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces wuyuanensis CGMCC 4.7042GCA_900103455scaffoldncbi1196353
66792Streptomyces wuyuanensis strain CGMCC 4.70421196353.3wgspatric1196353
66792Streptomyces wuyuanensis CGMCC 4.70422675903062draftimg1196353

GC content

@refGC-content
2104772
6777172.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.749yes
flagellatedno97.815yes
gram-positiveyes88.886no
anaerobicno98.777yes
aerobicyes89.964no
halophileno94.057no
spore-formingyes95.155yes
glucose-fermentno88.465no
thermophileno98.945yes
glucose-utilyes89.643yes

External links

@ref: 21047

culture collection no.: DSM 42132, CGMCC 4.7042, KCTC 29112

straininfo link

  • @ref: 88462
  • straininfo: 403219

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23355697Streptomyces wuyuanensis sp. nov., an actinomycete from soil.Zhang X, Zhang J, Zheng J, Xin D, Xin Y, Pang HInt J Syst Evol Microbiol10.1099/ijs.0.047050-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny30303477Streptomyces lichenis sp. nov., isolated from lichen.Saeng-In P, Phongsopitanun W, Savarajara A, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0030522018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lichens/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30918502Streptomyces tirandamycinicus sp. nov., a Novel Marine Sponge-Derived Actinobacterium With Antibacterial Potential Against Streptococcus agalactiae.Huang X, Kong F, Zhou S, Huang D, Zheng J, Zhu WFront Microbiol10.3389/fmicb.2019.004822019
Phylogeny32788709Streptomyces marianii sp. nov., a novel marine actinomycete from southern coast of India.Iniyan AM, Wink J, Landwehr W, Ramprasad EVV, Sasikala C, Ramana CV, Schumann P, Sproer C, Bunk B, Joseph FRS, Joshua SA, Shyl ESD, Kannan RR, Vincent SGPJ Antibiot (Tokyo)10.1038/s41429-020-0360-z2020India, Indian Ocean, *Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Streptomyces/*classification/*genetics/ultrastructure

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21047Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42132Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42132)
30900Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172723028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88462Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403219.1