Archive BacDiveID:10.13145/bacdive24615.20230509.8.1

Strain identifier

BacDive ID: 24615

Type strain:

Species: Streptomyces calidiresistens

Strain history: W.-J. Li YIM 78087.

NCBI tax ID(s): 1485586 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21044

BacDive-ID: 24615

DSM-Number: 42108

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces calidiresistens DSM 42108 is a spore-forming, mesophilic bacterium that was isolated from hot spring sediment.

NCBI tax id

NCBI tax id: 1485586
Matching level: species

strain history

@ref	history
21044	<- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 78087 <- L. Dong
67770	W.-J. Li YIM 78087.

doi: 10.13145/bacdive24615.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces calidiresistens
full scientific name: Streptomyces calidiresistens Duan et al. 2014

@ref: 21044

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces calidiresistens

full scientific name: Streptomyces calidiresistens Duan et al. 2014

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	92.163
69480		100	positive

multimedia

@ref: 21044
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42108.jpg
caption: Medium 252 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
21044	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
21044	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
21044	positive	growth	28	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	yes	100
69480	yes	100

observation

@ref: 67770
observation: quinones: MK-9(H₄), MK-9(H₆)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
21044	hot spring sediment	Yunnan Province, Tengchong county, Hehua hot spring	China	CHN	Asia
67770	Sediment from Hehua hot spring	Tengchong, Yunnan Province, south-west China	China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)

Safety information

risk assessment

@ref: 21044
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 21044
description: Streptomyces calidiresistens strain YIM 78087 16S ribosomal RNA gene, partial sequence
accession: KJ361473
length: 1588
database: ena
NCBI tax ID: 1485586

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Streptomyces calidiresistens DSM 42108	GCA_014141525	contig	ncbi	1485586
66792	Streptomyces calidiresistens strain DSM 42108	1485586.3	wgs	patric	1485586

GC content

@ref	GC-content	method
21044	73.0	high performance liquid chromatography (HPLC)
67770	73	high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	yes	100	no
motile	no	93.678	no
gram-positive	yes	92.681	no
anaerobic	no	98.92	no
aerobic	yes	92.173	no
halophile	no	71.983	no
spore-forming	yes	86.243	no
glucose-util	yes	89.294	no
flagellated	no	97.056	no
thermophile	no	90.625	yes
glucose-ferment	no	89.253	no

External links

@ref: 21044

culture collection no.: DSM 42108, BCRC 16955, JCM 19629, YIM 78087

straininfo link

@ref: 88459
straininfo: 398944

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	24803237	Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.	Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0180-x	2014	Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Hot Springs/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/classification/genetics/isolation & purification, Vitamin K 2/analysis	Genetics
Phylogeny	33161356	Streptomyces alkaliterrae sp. nov., isolated from an alkaline soil, and emended descriptions of Streptomyces alkaliphilus, Streptomyces calidiresistens and Streptomyces durbertensis.	Swiecimska M, Golinska P, Nouioui I, Wypij M, Rai M, Sangal V, Goodfellow M	Syst Appl Microbiol	10.1016/j.syapm.2020.126153	2020	Alkalies, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hydrogen-Ion Concentration, India, Lakes, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylethanolamines/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/isolation & purification, Vitamin K 2/chemistry	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21044	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-42108	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42108)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch	Predictions based on the model GenomeNet Sporulation v. 1	10.21203/rs.3.rs-2527258/v1
88459	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID398944.1