Strain identifier
BacDive ID: 24611
Type strain: 
Species: Streptococcus oralis subsp. dentisani
Strain Designation: 7746, Str. 7746
Strain history: <- A. Benitez-Paez, CSISP - Centro Superior de Investigación en Salud Pública, Valencia, Spain; strain 7746 <- R. Cabrera and P. Belda
NCBI tax ID(s): 1458253 (subspecies)
version 8.1 (current version)
General
@ref: 21041
BacDive-ID: 24611
DSM-Number: 27089
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Streptococcus oralis subsp. dentisani 7746 is a microaerophile, mesophilic human pathogen that was isolated from human caries-free tooth surface.
NCBI tax id
- NCBI tax id: 1458253
- Matching level: subspecies
strain history
- @ref: 21041
- history: <- A. Benitez-Paez, CSISP - Centro Superior de Investigación en Salud Pública, Valencia, Spain; strain 7746 <- R. Cabrera and P. Belda
doi: 10.13145/bacdive24611.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus oralis subsp. dentisani
- full scientific name: Streptococcus oralis subsp. dentisani (Camelo-Castillo et al. 2014) Jensen et al. 2016
synonyms
- @ref: 20215
- synonym: Streptococcus dentisani
@ref: 21041
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus oralis subsp. dentisani
full scientific name: Streptococcus oralis subsp. dentisani (Camelo-Castillo et al. 2014) Jensen et al. 2016
strain designation: 7746, Str. 7746
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.482 | |
| 69480 | 100 | positive |
colony morphology
- @ref: 21041
- type of hemolysis: alpha
- hemolysis ability: 1
- incubation period: 1-2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21041 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 21041 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
- @ref: 21041
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 21041
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.981 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68381 | 29016 | arginine | - | hydrolysis |
| 68381 | 16988 | D-ribose | - | builds acid from |
| 68381 | 16899 | D-mannitol | - | builds acid from |
| 68381 | 30911 | sorbitol | - | builds acid from |
| 68381 | 17716 | lactose | + | builds acid from |
| 68381 | 27082 | trehalose | - | builds acid from |
| 68381 | 16634 | raffinose | - | builds acid from |
| 68381 | 17992 | sucrose | + | builds acid from |
| 68381 | 30849 | L-arabinose | - | builds acid from |
| 68381 | 18333 | D-arabitol | - | builds acid from |
| 68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
| 68381 | 606565 | hippurate | - | hydrolysis |
| 68381 | 28087 | glycogen | - | builds acid from |
| 68381 | 27941 | pullulan | + | builds acid from |
| 68381 | 17306 | maltose | + | builds acid from |
| 68381 | 28053 | melibiose | - | builds acid from |
| 68381 | 6731 | melezitose | - | builds acid from |
| 68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
| 68381 | 16443 | D-tagatose | - | builds acid from |
| 68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 21041 | catalase | - | 1.11.1.6 |
| 21041 | cytochrome-c oxidase | - | 1.9.3.1 |
| 68381 | urease | - | 3.5.1.5 |
| 68381 | beta-mannosidase | - | 3.2.1.25 |
| 68381 | glycyl tryptophan arylamidase | + | |
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
| 68381 | beta-glucuronidase | - | 3.2.1.31 |
| 68381 | beta-glucosidase | - | 3.2.1.21 |
| 68381 | arginine dihydrolase | - | 3.5.3.6 |
API rID32STR
| @ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21041 | - | - | + | - | +/- | +/- | - | - | - | + | - | - | + | - | - | - | - | + | +/- | - | +/- | + | - | - | + | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 21041
- sample type: human caries-free tooth surface
- geographic location: Valencia
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Tooth |
taxonmaps
- @ref: 69479
- File name: preview.99_1950.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_4;99_1950&stattab=map
- Last taxonomy: Streptococcus
- 16S sequence: HG315102
- Sequence Identity:
- Total samples: 768
- aquatic counts: 11
- animal counts: 749
- plant counts: 8
Safety information
risk assessment
- @ref: 21041
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21041
- description: Streptococcus dentisani partial 16S rRNA gene, strain DSM 27089, isolate 7746
- accession: HG315102
- length: 1535
- database: ena
- NCBI tax ID: 1297534
Genome sequences
- @ref: 66792
- description: Streptococcus oralis strain FDAARGOS_885
- accession: 1303.918
- assembly level: complete
- database: patric
- NCBI tax ID: 1303
GC content
- @ref: 21041
- GC-content: 40.8
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.518 | no |
| gram-positive | yes | 94.727 | no |
| anaerobic | no | 94.987 | yes |
| halophile | yes | 78.233 | no |
| spore-forming | no | 93.601 | no |
| thermophile | no | 99.566 | yes |
| glucose-util | yes | 83.533 | no |
| aerobic | no | 95.848 | yes |
| flagellated | no | 96.446 | no |
| glucose-ferment | yes | 86.48 | no |
External links
@ref: 21041
culture collection no.: DSM 27089, CECT 8313
straininfo link
- @ref: 88456
- straininfo: 394928
literature
- topic: Phylogeny
- Pubmed-ID: 24006481
- title: Streptococcus dentisani sp. nov., a novel member of the mitis group.
- authors: Camelo-Castillo A, Benitez-Paez A, Belda-Ferre P, Cabrera-Rubio R, Mira A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.054098-0
- year: 2013
- mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Biofilms, DNA, Bacterial/genetics, Dental Plaque/*microbiology, Genome, Bacterial, Humans, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purification/metabolism, Superoxide Dismutase/genetics, Tooth/microbiology, alpha-Galactosidase/metabolism
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21041 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27089 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27089) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68381 | Automatically annotated from API rID32STR | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88456 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID394928.1 |