Strain identifier

BacDive ID: 24597

Type strain: Yes

Species: Staphylococcus petrasii

Strain Designation: SEQ110

Strain history: <- A. De Bel, UZ Brussel, Belgium; SEQ110 <- D. Piéard

NCBI tax ID(s): 1276936 (species)

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General

@ref: 20839

BacDive-ID: 24597

DSM-Number: 26618

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus petrasii SEQ110 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 1276936
  • Matching level: species

strain history

  • @ref: 20839
  • history: <- A. De Bel, UZ Brussel, Belgium; SEQ110 <- D. Piéard

doi: 10.13145/bacdive24597.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus petrasii
  • full scientific name: Staphylococcus petrasii Pant??ek et al. 2013

  • synonyms

    @refsynonym
    20215Staphylococcus jettensis
    20215Staphylococcus petrasii subsp. jettensis

@ref: 20839

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus petrasii subsp. jettensis

full scientific name: Staphylococcus petrasii subsp. jettensis (De Bel et al. 2013) De Bel et al. 2014

strain designation: SEQ110

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30792positive3.5 µm3.5 µmcoccus-shapedno
69480positive100

colony morphology

  • @ref: 20839
  • type of hemolysis: beta
  • hemolysis ability: 1
  • incubation period: 1-2 days

pigmentation

  • @ref: 30792
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20839COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
20839TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20839positivegrowth37mesophilic
62878positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30792facultative anaerobe
62878aerobe

spore formation

@refspore formationconfidence
30792no
69481no100
69480no99.826

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3079228757fructose+carbon source
3079217234glucose+carbon source
3079217306maltose+carbon source
3079217992sucrose+carbon source
3079227082trehalose+carbon source
3079217632nitrate+reduction
6837516199urea-hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
20839catalase+1.11.1.6
20839cytochrome-c oxidase-1.9.3.1
30792catalase+1.11.1.6
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
20839-+--++-+-+----++---+-+----
20839-+--++-+-+/-----++---+-+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20839human bloodJetteBelgiumBELEurope
62878Human bloodBrusselsBelgiumBELEurope2010-11-15

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 20839
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20839
  • description: Staphylococcus jettensis strain SEQ110 16S ribosomal RNA gene, partial sequence
  • accession: JN092118
  • length: 1444
  • database: ena
  • NCBI tax ID: 1077965

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus petrasii CCM 8494GCA_004745855scaffoldncbi1276936
66792Staphylococcus petrasii CCUG 62657GCA_002902105scaffoldncbi1276936
66792Staphylococcus petrasii subsp. jettensis strain CCM 84941077965.5wgspatric1276936
66792Staphylococcus petrasii subsp. jettensis strain CCUG 626571077965.3wgspatric1276936

GC content

@refGC-contentmethod
2083933.8high performance liquid chromatography (HPLC)
3079233.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.614yes
flagellatedno89.441no
gram-positiveyes92.223yes
anaerobicno99.357yes
aerobicyes94.354no
halophileyes94.596no
spore-formingno90.539yes
thermophileno99.629yes
glucose-utilyes89.281yes
glucose-fermentyes77.5yes

External links

@ref: 20839

culture collection no.: DSM 26618, CCM 8494, CCUG 62657, LMG 26879

straininfo link

  • @ref: 88443
  • straininfo: 379433

literature

  • topic: Phylogeny
  • Pubmed-ID: 25261165
  • title: Reclassification of Staphylococcus jettensis De Bel et al. 2013 as Staphylococcus petrasii subsp. jettensis subsp. nov. and emended description of Staphylococcus petrasii Pantucek et al. 2013.
  • authors: De Bel A, Svec P, Petras P, Sedlacek I, Pantucek R, Echahidi F, Pierard D, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064758-0
  • year: 2014
  • mesh: DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Ribotyping, Staphylococcus/*classification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20839Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26618Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26618)
30792Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172712328776041
62878Curators of the CCUGhttps://www.ccug.se/strain?id=62657Culture Collection University of Gothenburg (CCUG) (CCUG 62657)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88443Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379433.1