General

@ref: 20875

BacDive-ID: 24569

DSM-Number: 16787

keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Treponema sp. DSM 16787 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from periodontitis.

NCBI tax id

• NCBI tax id: 166
• Matching level: species

strain history

• @ref: 20875
• history: <- C. Wyss, Zuerich; OMZ 806

doi: 10.13145/bacdive24569.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/spirochaetota
• domain: Bacteria
• phylum: Spirochaetota
• class: Spirochaetia
• order: Spirochaetales
• family: Treponemataceae
• genus: Treponema
• species: Treponema sp.
• full scientific name: Treponema Schaudinn 1905 (Approved Lists 1980)

• synonyms

  @ref	synonym
  20215	Zuelzera
  20215	Helmutkoenigia
  20215	Leadbettera

@ref: 20875

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Treponemataceae

genus: Treponema

species: Treponema sp.

full scientific name: Treponema sp.

type strain: no

Morphology

cell morphology

• @ref: 69480
• gram stain: negative
• confidence: 99.806

colony morphology

• @ref: 20875
• incubation period: 2-3 days

Culture and growth conditions

culture medium

• @ref: 20875
• name: OMIZ-PAT (DSMZ Medium 1494)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1494
• composition: Name: . OMIZ-PAT Medium (modified) (DSMZ Medium 1494) Composition: (NH4)6Mo7O24 x 4 H2O 12.4 g/l Yeast extract 3.0 g/l Fe SO4 x 7 H2O 2.78015 g/l D-Glucose 2.0 g/l D-Mannose 2.0 g/l D-Arabinose 2.0 g/l L-Fucose 2.0 g/l D-Trehalose 2.0 g/l D-Sucrose 2.0 g/l L-Rhamnose 2.0 g/l NH4Cl 1.6 g/l Glutathione 1.5366 g/l Ascorbic acid 1.0 g/l NaHCO3 1.0 g/l Ethanol 1.0 g/l KCl 0.968 g/l D-Maltose 0.8 g/l D-glucuronic acid 0.8 g/l D-Mannitol 0.8 g/l D-galacturonic acid 0.8 g/l D-Fructose 0.8 g/l L-Glutamine 0.68 g/l L-Histidine 0.62 g/l NaVO3 0.61 g/l D 0.56 g/l Pyruvic acid 0.55 g/l L-Serine 0.525 g/l Fumaric acid 0.5 g/l HCl 0.3646 g/l L-Cysteine HCl 0.35 g/l L-Glutamic acid 0.3 g/l Formic acid 0.3 g/l ZnSO4 x 7 H2O 0.287 g/l MgSO4 x 7 H2O 0.25 g/l DL-carnitine 0.2 g/l N-Acetylglucosamine 0.2 g/l Citric acid 0.2 g/l L-Lysine HCl 0.182 g/l L-Arginine 0.175 g/l L-Ornithine HCl 0.17 g/l L-Phenylalanine 0.165 g/l CaCl2 x H2O 0.15 g/l L-Methionine 0.15 g/l L-Asparagine 0.15 g/l NaH2PO4 x H2O 0.14 g/l L-Leucine 0.131 g/l L-Isoleucine 0.131 g/l NiSO4 x 6 H2O 0.131 g/l L-Threonine 0.12 g/l L-Aspartic acid 0.118 g/l SnCl2 x 2 H2O 0.118 g/l L-Valine 0.117 g/l L-Proline 0.115 g/l L-Tryptophan 0.102 g/l Nicotinic acid 0.1 g/l Folinic acid 0.1 g/l L-Tyrosine 0.09 g/l NaOH 0.079994 g/l Glycine 0.075 g/l Nicotinamide 0.05 g/l Folic acid 0.05 g/l D-(+)-biotin 0.05 g/l Vitamine B12 0.05 g/l Choline chloride 0.05 g/l Myo-inositol 0.05 g/l L-Alanine 0.045 g/l Hemin 0.026076 g/l N-acetylmuramic acid 0.025 g/l Na2SeO3 0.0173 g/l MnSO4 x H2O 0.0169 g/l Riboflavine 0.01 g/l 2-Mercaptoethanesulfonic acid 0.01 g/l Phenol red 0.01 g/l Putrescine 2 HCl 0.005 g/l Pyridoxal hydrochloride 0.005 g/l Pyridoxal phosphate 0.005 g/l Calcium D-(+)-pantothenate 0.005 g/l Thiamine HCl 0.005 g/l Thiamin pyrophosphate 0.005 g/l Thymidine 0.0024 g/l N-(2-acetamido)-2-aminoethanesulfonic acid 0.0018 g/l Hypoxanthine 0.0014 g/l Uracil 0.0011 g/l Flavin adenine dinucleotide 0.001 g/l ß-nicotinamide adenine dinucleotide 0.001 g/l Coenzym A 0.001 g/l CuSO4 0.000789 g/l Cholesterol Asialofetuin 2-Mercaptoethanol Isovaleric acid Valeric acid 2-Methylbutyric acid Isobutyric acid DL-alpha-lipoic acid Rabbit serum Distilled water

culture temp

• @ref: 20875
• growth: positive
• type: growth
• temperature: 35
• range: mesophilic

Physiology and metabolism

oxygen tolerance

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 20875
• sample type: periodontitis
• country: Switzerland
• origin.country: CHE
• continent: Europe

isolation source categories

Sequence information

Genome sequences

• @ref: 66792
• description: Treponema sp. OMZ 806
• accession: 1706820.3
• assembly level: complete
• database: patric
• NCBI tax ID: 1706820

Genome-based predictions

predictions

External links

@ref: 20875

culture collection no.: DSM 16787, ATCC 700767, OMZ 806

Reference