Strain identifier
BacDive ID: 2456
Type strain:
Species: Rheinheimera texasensis
Strain Designation: A62-14B
Strain history: <- R. J. C. McLean, Dept. Biol., TX State Univ., San Marcos, USA; A62-14B <- M. B. Barnes, Tulane Natl. Primate Res. Center, Louisiana
NCBI tax ID(s): 1123055 (strain), 306205 (species)
General
@ref: 7023
BacDive-ID: 2456
DSM-Number: 17496
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Rheinheimera texasensis A62-14B is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Spring Lake .
NCBI tax id
NCBI tax id | Matching level |
---|---|
306205 | species |
1123055 | strain |
strain history
- @ref: 7023
- history: <- R. J. C. McLean, Dept. Biol., TX State Univ., San Marcos, USA; A62-14B <- M. B. Barnes, Tulane Natl. Primate Res. Center, Louisiana
doi: 10.13145/bacdive2456.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Rheinheimera
- species: Rheinheimera texasensis
- full scientific name: Rheinheimera texasensis Merchant et al. 2007
synonyms
- @ref: 20215
- synonym: Pararheinheimera texasensis
@ref: 7023
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Rheinheimera
species: Rheinheimera texasensis
full scientific name: Rheinheimera texasensis Merchant et al. 2007
strain designation: A62-14B
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
32153 | negative | 1.85 µm | 0.75 µm | rod-shaped | yes | |
69480 | yes | 97.878 | ||||
69480 | negative | 99.957 |
pigmentation
- @ref: 32153
- production: no
Culture and growth conditions
culture medium
- @ref: 7023
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7023 | positive | growth | 30 | mesophilic |
32153 | positive | growth | 25-37 | mesophilic |
32153 | positive | optimum | 33.5 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32153 | positive | growth | 6.5-9.6 | alkaliphile |
32153 | positive | optimum | 7.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 32153
- oxygen tolerance: anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
32153 | no | |
69481 | no | 100 |
69480 | no | 99.941 |
halophily
- @ref: 32153
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32153 | 22599 | arabinose | + | carbon source |
32153 | 17057 | cellobiose | + | carbon source |
32153 | 28260 | galactose | + | carbon source |
32153 | 17234 | glucose | + | carbon source |
32153 | 28087 | glycogen | + | carbon source |
32153 | 17716 | lactose | + | carbon source |
32153 | 51850 | methyl pyruvate | + | carbon source |
32153 | 506227 | N-acetylglucosamine | + | carbon source |
32153 | 17992 | sucrose | + | carbon source |
32153 | 27082 | trehalose | + | carbon source |
32153 | 53424 | tween 20 | + | carbon source |
32153 | 53423 | tween 40 | + | carbon source |
32153 | 53426 | tween 80 | + | carbon source |
32153 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32153 | catalase | + | 1.11.1.6 |
32153 | gelatinase | + | |
32153 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 7023
- sample type: Spring Lake (freshwater lake)
- geographic location: Texas, San Marcos
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Spring |
Safety information
risk assessment
- @ref: 7023
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7023
- description: Rheinheimera texasensis strain A62-14B 16S ribosomal RNA gene, complete sequence
- accession: AY701891
- length: 1447
- database: ena
- NCBI tax ID: 306205
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Rheinheimera texasensis DSM 17496 | GCA_000711985 | scaffold | ncbi | 1123055 |
66792 | Rheinheimera texasensis DSM 17496 | 1123055.3 | wgs | patric | 1123055 |
66792 | Pararheinheimera texasensis DSM 17496 | 2565956515 | draft | img | 1123055 |
GC content
- @ref: 7023
- GC-content: 48.2
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.937 | yes |
flagellated | yes | 83.22 | no |
gram-positive | no | 98.933 | yes |
anaerobic | no | 94.723 | yes |
halophile | no | 92.782 | yes |
spore-forming | no | 95.356 | yes |
thermophile | no | 99.582 | no |
glucose-util | yes | 90.415 | yes |
aerobic | yes | 83.878 | yes |
glucose-ferment | no | 70.622 | no |
External links
@ref: 7023
culture collection no.: DSM 17496, ATCC BAA 1235
straininfo link
- @ref: 72000
- straininfo: 398011
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17911314 | Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph. | Merchant MM, Welsh AK, McLean RJC | Int J Syst Evol Microbiol | 10.1099/ijs.0.65045-0 | 2007 | Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Chromatiaceae/*classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Locomotion/physiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Spores, Bacterial/cytology | Genetics |
Phylogeny | 18842867 | Rheinheimera tangshanensis sp. nov., a rice root-associated bacterium. | Zhang X, Sun L, Qiu F, McLean RJ, Jiang R, Song W | Int J Syst Evol Microbiol | 10.1099/ijs.0.65605-0 | 2008 | Chromatiaceae/chemistry/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genes, rRNA, Genotype, Molecular Sequence Data, Oryza/*microbiology, Phenotype, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Genetics |
Phylogeny | 21030822 | Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond. | Chen WM, Lin CY, Young CC, Sheu SY | J Microbiol Biotechnol | 10.4014/jmb.1004.04048 | 2010 | Anti-Infective Agents/*metabolism, Chromatiaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Phylogeny | 26220076 | Taxonomic description and genome sequence of Rheinheimera mesophila sp. nov., isolated from an industrial waste site. | Kumar A, Bajaj A, Mathan Kumar R, Kaur G, Kaur N, Kumar Singh N, Manickam N, Mayilraj S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000471 | 2015 | Bacterial Typing Techniques, Base Sequence, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, *Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Pesticides, Phospholipids/chemistry, *Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants | Genetics |
Phylogeny | 29799388 | Rheinheimera coerulea sp. nov., isolated from a freshwater creek, and emended description of genus Rheinheimera Brettar et al. 2002. | Sheu SY, Chen WT, Young CC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002838 | 2018 | Bacterial Typing Techniques, Base Composition, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 31800389 | Rheinheimera sediminis sp. nov., a marine bacterium isolated from coastal sediment. | Yu Q, Qi Y, Zhang H, Pu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003917 | 2020 | Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7023 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17496) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17496 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32153 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28396 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
72000 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398011.1 | StrainInfo: A central database for resolving microbial strain identifiers |