Strain identifier

BacDive ID: 2456

Type strain: Yes

Species: Rheinheimera texasensis

Strain Designation: A62-14B

Strain history: <- R. J. C. McLean, Dept. Biol., TX State Univ., San Marcos, USA; A62-14B <- M. B. Barnes, Tulane Natl. Primate Res. Center, Louisiana

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7023

BacDive-ID: 2456

DSM-Number: 17496

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Rheinheimera texasensis A62-14B is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Spring Lake .

NCBI tax id

NCBI tax idMatching level
306205species
1123055strain

strain history

  • @ref: 7023
  • history: <- R. J. C. McLean, Dept. Biol., TX State Univ., San Marcos, USA; A62-14B <- M. B. Barnes, Tulane Natl. Primate Res. Center, Louisiana

doi: 10.13145/bacdive2456.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Chromatiaceae
  • genus: Rheinheimera
  • species: Rheinheimera texasensis
  • full scientific name: Rheinheimera texasensis Merchant et al. 2007
  • synonyms

    • @ref: 20215
    • synonym: Pararheinheimera texasensis

@ref: 7023

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Chromatiaceae

genus: Rheinheimera

species: Rheinheimera texasensis

full scientific name: Rheinheimera texasensis Merchant et al. 2007

strain designation: A62-14B

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32153negative1.85 µm0.75 µmrod-shapedyes
69480yes97.878
69480negative99.957

pigmentation

  • @ref: 32153
  • production: no

Culture and growth conditions

culture medium

  • @ref: 7023
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7023positivegrowth30mesophilic
32153positivegrowth25-37mesophilic
32153positiveoptimum33.5mesophilic

culture pH

@refabilitytypepHPH range
32153positivegrowth6.5-9.6alkaliphile
32153positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

  • @ref: 32153
  • oxygen tolerance: anaerobe

spore formation

@refspore formationconfidence
32153no
69481no100
69480no99.941

halophily

  • @ref: 32153
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3215322599arabinose+carbon source
3215317057cellobiose+carbon source
3215328260galactose+carbon source
3215317234glucose+carbon source
3215328087glycogen+carbon source
3215317716lactose+carbon source
3215351850methyl pyruvate+carbon source
32153506227N-acetylglucosamine+carbon source
3215317992sucrose+carbon source
3215327082trehalose+carbon source
3215353424tween 20+carbon source
3215353423tween 40+carbon source
3215353426tween 80+carbon source
3215317632nitrate+reduction

enzymes

@refvalueactivityec
32153catalase+1.11.1.6
32153gelatinase+
32153cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7023
  • sample type: Spring Lake (freshwater lake)
  • geographic location: Texas, San Marcos
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Spring

Safety information

risk assessment

  • @ref: 7023
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7023
  • description: Rheinheimera texasensis strain A62-14B 16S ribosomal RNA gene, complete sequence
  • accession: AY701891
  • length: 1447
  • database: ena
  • NCBI tax ID: 306205

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rheinheimera texasensis DSM 17496GCA_000711985scaffoldncbi1123055
66792Rheinheimera texasensis DSM 174961123055.3wgspatric1123055
66792Pararheinheimera texasensis DSM 174962565956515draftimg1123055

GC content

  • @ref: 7023
  • GC-content: 48.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.937yes
flagellatedyes83.22no
gram-positiveno98.933yes
anaerobicno94.723yes
halophileno92.782yes
spore-formingno95.356yes
thermophileno99.582no
glucose-utilyes90.415yes
aerobicyes83.878yes
glucose-fermentno70.622no

External links

@ref: 7023

culture collection no.: DSM 17496, ATCC BAA 1235

straininfo link

  • @ref: 72000
  • straininfo: 398011

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17911314Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph.Merchant MM, Welsh AK, McLean RJCInt J Syst Evol Microbiol10.1099/ijs.0.65045-02007Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Chromatiaceae/*classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Locomotion/physiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Spores, Bacterial/cytologyGenetics
Phylogeny18842867Rheinheimera tangshanensis sp. nov., a rice root-associated bacterium.Zhang X, Sun L, Qiu F, McLean RJ, Jiang R, Song WInt J Syst Evol Microbiol10.1099/ijs.0.65605-02008Chromatiaceae/chemistry/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genes, rRNA, Genotype, Molecular Sequence Data, Oryza/*microbiology, Phenotype, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Soil MicrobiologyGenetics
Phylogeny21030822Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond.Chen WM, Lin CY, Young CC, Sheu SYJ Microbiol Biotechnol10.4014/jmb.1004.040482010Anti-Infective Agents/*metabolism, Chromatiaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny26220076Taxonomic description and genome sequence of Rheinheimera mesophila sp. nov., isolated from an industrial waste site.Kumar A, Bajaj A, Mathan Kumar R, Kaur G, Kaur N, Kumar Singh N, Manickam N, Mayilraj SInt J Syst Evol Microbiol10.1099/ijsem.0.0004712015Bacterial Typing Techniques, Base Sequence, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, *Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Pesticides, Phospholipids/chemistry, *Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil PollutantsGenetics
Phylogeny29799388Rheinheimera coerulea sp. nov., isolated from a freshwater creek, and emended description of genus Rheinheimera Brettar et al. 2002.Sheu SY, Chen WT, Young CC, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0028382018Bacterial Typing Techniques, Base Composition, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistryTranscriptome
Phylogeny31800389Rheinheimera sediminis sp. nov., a marine bacterium isolated from coastal sediment.Yu Q, Qi Y, Zhang H, Pu JInt J Syst Evol Microbiol10.1099/ijsem.0.0039172020Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7023Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17496)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17496
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32153Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2839628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
72000Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398011.1StrainInfo: A central database for resolving microbial strain identifiers