Strain identifier
BacDive ID: 24557
Type strain: 
Species: Sphingomonas sp.
Strain Designation: 5.2
Strain history: <- A. Francez-Charlot, ETH, Switzerland; strain 5.2 <- C. Knief
NCBI tax ID(s): 28214 (species)
version 8.1 (current version)
General
@ref: 20815
BacDive-ID: 24557
DSM-Number: 24959
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas sp. 5.2 is a mesophilic bacterium that was isolated from Arabidopsis thaliana seed.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 20815
- history: <- A. Francez-Charlot, ETH, Switzerland; strain 5.2 <- C. Knief
doi: 10.13145/bacdive24557.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 20815
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Pseudomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
strain designation: 5.2
type strain: no
Morphology
multimedia
- @ref: 20815
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24959.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 20815
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 20815
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20815
- sample type: Arabidopsis thaliana seed
- host species: Arabidopsis thaliana
- geographic location: Ciruelos de Coca
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_2129.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_761;97_887;98_1663;99_2129&stattab=map
- Last taxonomy: Sphingomonas
- 16S sequence: FR696369
- Sequence Identity:
- Total samples: 2352
- soil counts: 377
- aquatic counts: 398
- animal counts: 1405
- plant counts: 172
Sequence information
16S sequences
- @ref: 20815
- description: Sphingomonas sp. 5.2 partial 16S rRNA gene, strain 5.2
- accession: FR696369
- length: 1354
- database: ena
- NCBI tax ID: 907063
External links
@ref: 20815
culture collection no.: DSM 24959
straininfo link
- @ref: 88412
- straininfo: 400566
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20815 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24959 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24959) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88412 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400566.1 |