Strain identifier
BacDive ID: 24554
Type strain: 
Species: Novosphingobium malaysiense
Strain history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 273
NCBI tax ID(s): 1348853 (species)
version 8.1 (current version)
General
@ref: 20695
BacDive-ID: 24554
DSM-Number: 27798
keywords: 16S sequence, Bacteria, mesophilic
description: Novosphingobium malaysiense DSM 27798 is a mesophilic bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 1348853
- Matching level: species
strain history
- @ref: 20695
- history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 273
doi: 10.13145/bacdive24554.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Novosphingobium
- species: Novosphingobium malaysiense
- full scientific name: Novosphingobium malaysiense Lee et al. 2014
@ref: 20695
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Pseudomonadales
family: Erythrobacteraceae
genus: Novosphingobium
species: Novosphingobium malaysiense
full scientific name: Novosphingobium malaysiense Lee et al. 2014
type strain: yes
Morphology
colony morphology
- @ref: 20695
- incubation period: 8-14 days
multimedia
- @ref: 20695
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27798.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20695 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 20695 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
culture temp
- @ref: 20695
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20695
- sample type: mangrove soil
- geographic location: Pahang state, Tanjung Lumpur river (3° 48' 3.2'' N 103° 20' 22.7'' E), site MUSC-TLS2
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.8009
- longitude: 103.34
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_7295.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_795;97_4189;98_5352;99_7295&stattab=map
- Last taxonomy: Novosphingobium malaysiense
- 16S sequence: KC907395
- Sequence Identity:
- Total samples: 66
- soil counts: 20
- aquatic counts: 29
- animal counts: 16
- plant counts: 1
Safety information
risk assessment
- @ref: 20695
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20695
- description: Novosphingobium malaysiense strain MUSC 273 16S ribosomal RNA gene, partial sequence
- accession: KC907395
- length: 1453
- database: ena
- NCBI tax ID: 1348853
GC content
- @ref: 20695
- GC-content: 63.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 20695
culture collection no.: DSM 27798, MCCC 1A00645, NBRC 109947, MUSC 273
straininfo link
- @ref: 88409
- straininfo: 403455
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24408529 | Novosphingobium malaysiense sp. nov. isolated from mangrove sediment. | Lee LH, Azman AS, Zainal N, Eng SK, Fang CM, Hong K, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.059014-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/chemistry, *Water Microbiology | Genetics |
| Phylogeny | 25713040 | Croceicoccus naphthovorans sp. nov., a polycyclic aromatic hydrocarbons-degrading and acylhomoserine-lactone-producing bacterium isolated from marine biofilm, and emended description of the genus Croceicoccus. | Huang Y, Zeng Y, Feng H, Wu Y, Xu X | Int J Syst Evol Microbiol | 10.1099/ijs.0.000132 | 2015 | Acyl-Butyrolactones/*metabolism, Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Biofilms, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Ships, Ubiquinone/chemistry | Metabolism |
| Phylogeny | 34328829 | Novosphingobium aureum sp. nov., a marine bacterium isolated from salt flat sediment. | Yoo Y, Kim D, Lee H, Khim JS, Kim B, Yang D, Pathiraja D, Choi IG, Kim JJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004930 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Sphingomonadaceae, Ubiquinone | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20695 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27798 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27798) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88409 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403455.1 |