Strain identifier
BacDive ID: 24552
Type strain:
Species: Mucilaginibacter polytrichastri
Strain Designation: RG4-7
Strain history: <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; RG4-7 <- R. Zhao and X. Chen
NCBI tax ID(s): 1302689 (species)
General
@ref: 21149
BacDive-ID: 24552
DSM-Number: 26907
keywords: genome sequence, 16S sequence, Bacteria
description: Mucilaginibacter polytrichastri RG4-7 is a bacterium that was isolated from surface-disinfected moss Polytrichastrum formosum.
NCBI tax id
- NCBI tax id: 1302689
- Matching level: species
strain history
- @ref: 21149
- history: <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; RG4-7 <- R. Zhao and X. Chen
doi: 10.13145/bacdive24552.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter polytrichastri
- full scientific name: Mucilaginibacter polytrichastri Chen et al. 2014
@ref: 21149
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter polytrichastri
full scientific name: Mucilaginibacter polytrichastri Chen et al. 2014
strain designation: RG4-7
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 91.653 | |
69480 | 99.913 | negative |
Culture and growth conditions
culture medium
- @ref: 21149
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 21149
- sample type: surface-disinfected moss Polytrichastrum formosum
- host species: Polytrichastrum formosum
- geographic location: Tibet plateau, Gawalong glacier zone (29° 38' 58.66'' N 91° 06' 56.34'' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 29.6496
- longitude: 91.1156
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Moss |
#Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_3966.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_2015;97_2427;98_3003;99_3966&stattab=map
- Last taxonomy: Mucilaginibacter polytrichastri subclade
- 16S sequence: KC560020
- Sequence Identity:
- Total samples: 1309
- soil counts: 628
- aquatic counts: 251
- animal counts: 228
- plant counts: 202
Safety information
risk assessment
- @ref: 21149
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21149
- description: Mucilaginibacter polytrichastri strain RG4-7 from China 16S ribosomal RNA gene, partial sequence
- accession: KC560020
- length: 1483
- database: ena
- NCBI tax ID: 1302689
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mucilaginibacter polytrichastri DSM 26907 | GCA_900116355 | scaffold | ncbi | 1302689 |
66792 | Mucilaginibacter polytrichastri RG4-7 | GCA_001911425 | scaffold | ncbi | 1302689 |
66792 | Mucilaginibacter polytrichastri strain DSM 26907 | 1302689.3 | wgs | patric | 1302689 |
66792 | Mucilaginibacter polytrichastri RG4-7 | 2843472405 | draft | img | 1302689 |
66792 | Mucilaginibacter polytrichastri DSM 26907 | 2622736518 | draft | img | 1302689 |
GC content
- @ref: 21149
- GC-content: 39.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 90.169 | no |
flagellated | no | 98.187 | no |
gram-positive | no | 96.562 | no |
anaerobic | no | 99.448 | no |
aerobic | yes | 87.887 | no |
halophile | no | 95.787 | no |
spore-forming | no | 94.051 | no |
glucose-ferment | no | 89.325 | no |
thermophile | no | 99.055 | no |
glucose-util | yes | 90.563 | no |
External links
@ref: 21149
culture collection no.: DSM 26907, CGMCC 1.12493
straininfo link
- @ref: 88407
- straininfo: 398261
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24436070 | Mucilaginibacter polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Mucilaginibacter. | Chen XY, Zhao R, Tian Y, Kong BH, Li XD, Chen ZL, Li YH | Int J Syst Evol Microbiol | 10.1099/ijs.0.055335-0 | 2014 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, Bryophyta/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Genetics | 31757614 | An assessment of the genomics, comparative genomics and cellulose degradation potential of Mucilaginibacter polytrichastri strain RG4-7. | Wang ZY, Wang RX, Zhou JS, Cheng JF, Li YH | Bioresour Technol | 10.1016/j.biortech.2019.122389 | 2019 | Bacteroidetes, Carbohydrate Metabolism, *Cellulase, *Cellulose, Genomics, Whole Genome Sequencing | Metabolism |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21149 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26907 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26907) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
88407 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398261.1 |