Strain identifier
BacDive ID: 24551
Type strain: 
Species: Sphingobacterium psychroaquaticum
Strain Designation: MOL-1
Strain history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; MOL-1
NCBI tax ID(s): 561061 (species)
version 8.1 (current version)
General
@ref: 20812
BacDive-ID: 24551
DSM-Number: 22418
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Sphingobacterium psychroaquaticum MOL-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from lake water.
NCBI tax id
- NCBI tax id: 561061
- Matching level: species
strain history
- @ref: 20812
- history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; MOL-1
doi: 10.13145/bacdive24551.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium psychroaquaticum
- full scientific name: Sphingobacterium psychroaquaticum Albert et al. 2013
@ref: 20812
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium psychroaquaticum
full scientific name: Sphingobacterium psychroaquaticum Albert et al. 2013
strain designation: MOL-1
type strain: yes
Morphology
cell morphology
- @ref: 30764
- gram stain: negative
- cell length: 2.5 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30764
- production: yes
Culture and growth conditions
culture medium
- @ref: 20812
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20812 | positive | growth | 28 | mesophilic |
| 30764 | positive | growth | 05-35 |
Physiology and metabolism
oxygen tolerance
- @ref: 30764
- oxygen tolerance: aerobe
halophily
- @ref: 30764
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4.5 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30764 | 22599 | arabinose | + | carbon source |
| 30764 | 17057 | cellobiose | + | carbon source |
| 30764 | 28757 | fructose | + | carbon source |
| 30764 | 28260 | galactose | + | carbon source |
| 30764 | 17716 | lactose | + | carbon source |
| 30764 | 37684 | mannose | + | carbon source |
| 30764 | 33942 | ribose | + | carbon source |
| 30764 | 17992 | sucrose | + | carbon source |
| 30764 | 18222 | xylose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30764 | catalase | + | 1.11.1.6 |
| 30764 | gelatinase | + |
Isolation, sampling and environmental information
isolation
- @ref: 20812
- sample type: lake water
- geographic location: Wisconsin, Lake Michigan
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Lake (large)
taxonmaps
- @ref: 69479
- File name: preview.99_43607.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_19258;97_24971;98_31645;99_43607&stattab=map
- Last taxonomy: Sphingobacterium psychroaquaticum subclade
- 16S sequence: FJ156081
- Sequence Identity:
- Total samples: 1035
- soil counts: 174
- aquatic counts: 175
- animal counts: 583
- plant counts: 103
Safety information
risk assessment
- @ref: 20812
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20812
- description: Sphingobacterium psychroaquaticum strain MOL-1 16S ribosomal RNA gene, partial sequence
- accession: FJ156081
- length: 1525
- database: ena
- NCBI tax ID: 561061
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sphingobacterium psychroaquaticum DSM 22418 | GCA_900177625 | scaffold | ncbi | 561061 |
| 66792 | Sphingobacterium psychroaquaticum strain DSM 22418 | 561061.3 | wgs | patric | 561061 |
| 66792 | Sphingobacterium psychroaquaticum DSM 22418 | 2595699002 | draft | img | 561061 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.298 | no |
| flagellated | no | 95.421 | no |
| gram-positive | no | 97.14 | yes |
| anaerobic | no | 98.615 | yes |
| aerobic | yes | 84.627 | yes |
| halophile | no | 91.543 | no |
| spore-forming | no | 95.278 | no |
| thermophile | no | 98.83 | yes |
| glucose-util | yes | 89.799 | no |
| glucose-ferment | no | 87.047 | no |
External links
@ref: 20812
culture collection no.: DSM 22418, NRRL B-59232
straininfo link
- @ref: 88406
- straininfo: 402531
literature
- topic: Phylogeny
- Pubmed-ID: 22659507
- title: Sphingobacterium psychroaquaticum sp. nov., a psychrophilic bacterium isolated from Lake Michigan water.
- authors: Albert RA, Waas NE, Pavlons SC, Pearson JL, Ketelboeter L, Rossello-Mora R, Busse HJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.043844-0
- year: 2012
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/analysis, Sphingobacterium/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
| 20812 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22418 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22418) | ||||
| 30764 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27095 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
| 88406 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402531.1 |