Strain identifier
BacDive ID: 24539
Type strain: 
Species: Rubrobacter bracarensis
Strain Designation: VF70612-S5
Strain history: <- V. Jurado, CSIC; VF70612-S5 <- A. Miller
NCBI tax ID(s): 1017354 (species)
General
@ref: 20788
BacDive-ID: 24539
DSM-Number: 24910
keywords: 16S sequence, Bacteria, mesophilic
description: Rubrobacter bracarensis VF70612-S5 is a mesophilic bacterium that was isolated from green biofilm.
NCBI tax id
- NCBI tax id: 1017354
- Matching level: species
strain history
- @ref: 20788
- history: <- V. Jurado, CSIC; VF70612-S5 <- A. Miller
doi: 10.13145/bacdive24539.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Rubrobacteria
- order: Rubrobacterales
- family: Rubrobacteraceae
- genus: Rubrobacter
- species: Rubrobacter bracarensis
- full scientific name: Rubrobacter bracarensis Jurado et al. 2013
@ref: 20788
domain: Bacteria
phylum: Actinobacteria
class: Rubrobacteria
order: Rubrobacterales
family: Rubrobacteraceae
genus: Rubrobacter
species: Rubrobacter bracarensis
full scientific name: Rubrobacter bracarensis Jurado et al. 2013 emend. Albuquerque et al. 2014
strain designation: VF70612-S5
type strain: no
Morphology
colony morphology
- @ref: 20788
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 20788
- name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1350
- composition: Name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350) Composition: NaCl 30.0 g/l Trypticase soy broth 30.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Distilled water
culture temp
- @ref: 20788
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20788
- sample type: green biofilm
- geographic location: Barcelos
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Biofilm
taxonmaps
- @ref: 69479
- File name: preview.99_12190.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_408;96_2197;97_7435;98_9161;99_12190&stattab=map
- Last taxonomy: Rubrobacter bracarensis subclade
- 16S sequence: HE672088
- Sequence Identity:
- Total samples: 449
- soil counts: 86
- aquatic counts: 89
- animal counts: 252
- plant counts: 22
Safety information
risk assessment
- @ref: 20788
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20788
- description: Rubrobacter bracarensis partial 16S rRNA gene, strain VFA70612_S5
- accession: HE672088
- length: 1441
- database: ena
- NCBI tax ID: 1017354
External links
@ref: 20788
culture collection no.: DSM 24910
straininfo link
- @ref: 88394
- straininfo: 400785
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20788 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24910 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24910) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88394 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400785.1 |