Strain identifier
BacDive ID: 24538
Type strain:
Species: Rubrobacter bracarensis
Strain Designation: VF70612-S4
Strain history: <- V. Jurado, CSIC; VF70612-S4 <- A. Miller
NCBI tax ID(s): 1017354 (species)
General
@ref: 20787
BacDive-ID: 24538
DSM-Number: 24909
keywords: 16S sequence, Bacteria, mesophilic
description: Rubrobacter bracarensis VF70612-S4 is a mesophilic bacterium that was isolated from green biofilm.
NCBI tax id
- NCBI tax id: 1017354
- Matching level: species
strain history
- @ref: 20787
- history: <- V. Jurado, CSIC; VF70612-S4 <- A. Miller
doi: 10.13145/bacdive24538.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Rubrobacteria
- order: Rubrobacterales
- family: Rubrobacteraceae
- genus: Rubrobacter
- species: Rubrobacter bracarensis
- full scientific name: Rubrobacter bracarensis Jurado et al. 2013
@ref: 20787
domain: Bacteria
phylum: Actinobacteria
class: Rubrobacteria
order: Rubrobacterales
family: Rubrobacteraceae
genus: Rubrobacter
species: Rubrobacter bracarensis
full scientific name: Rubrobacter bracarensis Jurado et al. 2013 emend. Albuquerque et al. 2014
strain designation: VF70612-S4
type strain: no
Morphology
colony morphology
- @ref: 20787
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 20787
- name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1350
- composition: Name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350) Composition: NaCl 30.0 g/l Trypticase soy broth 30.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Distilled water
culture temp
- @ref: 20787
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20787
- sample type: green biofilm
- geographic location: Barcelos
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Biofilm
taxonmaps
- @ref: 69479
- File name: preview.99_12190.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_408;96_2197;97_7435;98_9161;99_12190&stattab=map
- Last taxonomy: Rubrobacter bracarensis subclade
- 16S sequence: HE672087
- Sequence Identity:
- Total samples: 449
- soil counts: 86
- aquatic counts: 89
- animal counts: 252
- plant counts: 22
Safety information
risk assessment
- @ref: 20787
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20787
- description: Rubrobacter bracarensis partial 16S rRNA gene, strain VFA70612_S4
- accession: HE672087
- length: 1441
- database: ena
- NCBI tax ID: 1017354
External links
@ref: 20787
culture collection no.: DSM 24909
straininfo link
- @ref: 88393
- straininfo: 396821
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
20787 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24909 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24909) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88393 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396821.1 |